1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ctccctatgctttctagtccaggatgccatttcctatatacttattagtattactgtttgactgtttcatgtgctgaactagtgaagattctctttacagTAAATACTCGCGTGTTAGTAAAAAGACTCTTGGATTACAAGGTGGAGGAGAACAAATTGCTATAATCAGAGCATCTGGAAGTATAACACGGACTCGTAGC
species | Zea mays |
transcript | GRMZM2G122843_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
tagtattactgtttgactgtttcatgtgctgaactagtgaagattctctttacagTAAATACTCGCGTGTTAGTAAAAAGACTCTTGGATTACAAGGTGGAGGAGAACAAATTGCTATAATCAGAGCATCTGGAAGTATAACACGGACTCGTAGC
gtttgac putative branch site (score: 64)
ttctctttac putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctccctatgctttctagtccaggatgccatttcctatatacttattagtattactgtttgactgtttcatgtgctgaactagtgaagattctctttacagTAAATACTCGCGTGTTAGTAAAAAGACTCTTGGATTACAAGGTGGAGGAGAACAAATTGCTATAATCAGAGCATCTGGAAGTATAACACGGACTCGTAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - -tgctttc
- - - - - - - - - - -ggatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - actgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgaa