1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ctttgtgtgtggatatttagtttgactagcgttcgccattgatatatattttttcaagggaacaagttgaccttaccttttctttttattttctctgtagGCACTCGACCTTATAAGAGGGAAGAACTTTCTAGTGCTGATGGATTCTTGCTTGGAAGGTCATGTATCCAGCTCCGATGGAACTGACTTGATGCGATTAG
species | Zea mays |
transcript | GRMZM2G121826_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCACTGTCTTGCTTGATCTCCTGAGTGGAAAGCACATTCCACCNAGTCAT GCACTCGACCTTATAAGAGGGAAGAACTTTCTAGTGCTGATGGATTCTTTGEST: gi|32801388|gb|CD953624.1|CD953624
genomic: GCACTGTCTTGCTTGATCTCCTGAGTGGAAAGCACATTCCACCAAGTCATgtaagtttgc ... ttctctgtagGCACTCGACCTTATAAGAGGGAAGAACTTTCTAGTGCTGATGGATTCTT-G
EST: GCACTGTCTTGCTTGATCTCCTGAGTGGAAAGCACATTCCACCAAGTCAT GCACTCGACCTTATAAGAGGGAAGAACTTTCTAGTGCTGATGGATTCTTGCEST: gi|9952536|gb|BE639119.1|BE639119
genomic: GCACTGTCTTGCTTGATCTCCTGAGTGGAAAGCACATTCCACCAAGTCATgtaagtttgc ... ttctctgtagGCACTCGACCTTATAAGAGGGAAGAACTTTCTAGTGCTGATGGATTCTTGC
EST: GCACTGTCTTGCTTGATCTCCTGAGTGGAAAGCACATTCCACCAAGTCAT GCACTCGACCTTATAAGAGGGAAGAACTTTCTAGTGCTGATGGATTCTTGC
genomic: GCACTGTCTTGCTTGATCTCCTGAGTGGAAAGCACATTCCACCAAGTCATgtaagtttgc ... ttctctgtagGCACTCGACCTTATAAGAGGGAAGAACTTTCTAGTGCTGATGGATTCTTGC
atattttttcaagggaacaagttgaccttaccttttctttttattttctctgtagGCACTCGACCTTATAAGAGGGAAGAACTTTCTAGTGCTGATGGATTCTTGCTTGGAAGGTCATGTATCCAGCTCCGATGGAACTGACTTGATGCGATTAG
accttac putative branch site (score: 110)
ttgaccttaccttttc CT-rich tract
ttttctttttattttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttgtgtgtggatatttagtttgactagcgttcgccattgatatatattttttcaagggaacaagttgaccttaccttttctttttattttctctgtagGCACTCGACCTTATAAGAGGGAAGAACTTTCTAGTGCTGATGGATTCTTGCTTGGAAGGTCATGTATCCAGCTCCGATGGAACTGACTTGATGCGATTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA