1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttgttacaagccaatgagcccctcttttggcaaccgagtaagaattacagttgtttacaccagcagttgctgatcctcaagttctgattattttattcagGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATACCACACTGGGCAGCCCCTGGATAAGATCAACGTAGATACTGACCGTGACT
species | Zea mays |
transcript | GRMZM2G121456_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAG GCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATACEST: gi|149088220|gb|EE287341.2|EE287341
genomic: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGgtaaactcgc ... ttttattcagGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATAC
EST: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAG GCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATACEST: gi|88752492|gb|DY536633.1|DY536633
genomic: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGgtaaactcgc ... ttttattcagGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATAC
EST: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAG GCCAATGAGATGCTGCACCCCAAGGCGAACTTAAATGGATACCTTGCATACEST: gi|20208074|gb|BQ134163.1|BQ134163
genomic: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGgtaaactcgc ... ttttattcagGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATAC
EST: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAG GCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATACEST: gi|32942454|gb|CF047273.1|CF047273
genomic: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGgtaaactcgc ... ttttattcagGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATAC
EST: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAG GCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATACEST: gi|71307771|gb|DR790104.1|DR790104
genomic: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGgtaaactcgc ... ttttattcagGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATAC
EST: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAG GCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATACEST: gi|76281084|gb|DV020652.1|DV020652
genomic: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGgtaaactcgc ... ttttattcagGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATAC
EST: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAG GCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATACEST: gi|149043157|gb|EE047302.2|EE047302
genomic: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGgtaaactcgc ... ttttattcagGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATAC
EST: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAG GCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATACEST: gi|74237087|gb|DT645001.1|DT645001
genomic: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGgtaaactcgc ... ttttattcagGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATAC
EST: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAG GCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATACEST: gi|76012849|gb|DT940019.1|DT940019
genomic: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGgtaaactcgc ... ttttattcagGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATAC
EST: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAG GCCAATGAGATGCTGCACCCCAAGGCGAACTTAAATGGATACCTTGCATACEST: gi|148934817|gb|EC878863.2|EC878863
genomic: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGgtaaactcgc ... ttttattcagGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATAC
EST: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAG GCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATAC
genomic: ATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGgtaaactcgc ... ttttattcagGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATAC
tacagttgtttacaccagcagttgctgatcctcaagttctgattattttattcagGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATACCACACTGGGCAGCCCCTGGATAAGATCAACGTAGATACTGACCGTGACT
ttctgat putative branch site (score: 214)
ttttattc putative PPT
ttctgattattttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgttacaagccaatgagcccctcttttggcaaccgagtaagaattacagttgtttacaccagcagttgctgatcctcaagttctgattattttattcagGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATACCACACTGGGCAGCCCCTGGATAAGATCAACGTAGATACTGACCGTGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - caagcca
- - - - - - - - - - - - - - - - - - - - - - - - -gttgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -caccagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctgat