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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatagttctaacttctggagcaatattttgcaggattaccatataaaacttccctttcgtttcgaaatgagatcgtataaaattcaggtcatgataaaatgactgattatagaatccttatttgagcaattttcttgctgcaactttttagttttctatttgtggacaactctttaattgagttatatgatcagCCCAGCAGCTTGAGAGAGACTTGAGTGCTGCAGCCACAGAATCAGTTGCTGCTGACAAAAAGCTTGCTATATTTGATAAAATATTTTCTGCATACCATGA

Basic information

species Zea mays
transcript GRMZM2G121022_T04
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G121022_T04 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os08g23360.1 (Oryza sativa), 3'ss of exon 7
gtatatagttctaacttctggagcaatattttgcaggattaccatataaaacttccctttcgtttcgaaatgagatcgtataaaattcaggtcatgataaaatgactgattatagaatccttatttgagcaattttcttgctgcaactttttagttttctatttgtggacaactctttaattgagttatatgatcagCCCAGCAGCTTGAGAGAGACTTGAGTGCTGCAGCCACAGAATCAGTTGCTGCTGACAAAAAGCTTGCTATATTTGATAAAATATTTTCTGCATACCATGA
                                                                                           | |  |||    ||     | |  | ||  ||    | ||| ||    ||| |  ||  ||||||||  | |||| ||   |||||||||  ||||||||||||||| || ||||| |||| |||||||| || ||||  ||||||||||||| | || |||||||| ||||  || ||||| |||||||||||||||||||||||
-------------------------------------------------------------------------------------------ttaatatacgcagatctcctgtgtattcgataaaaaaacaaatt----gctacgtctgcttagtttt--acttgtcgaattctctttaatctagttatatgatcagCTCAACAGCTGGAGAAAGACTTGAATGGTGCAAACACAGAATCAGTTCCAGCGGACAAAAAACTTGGCATTTTTGACAAAATATTTTCTGCATACCATGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31358954|gb|CD443311.1|CD443311
EST:     TCGCACTTTTCCTATTACAAATGCAAAGACCCGTGTCTCTATTTTGAAAG                         CCCAGCAGCTTGAGAGAGACTTGAGTGCTGCAGCCACAGAATCAGTTGCTG
genomic: TCGCACTTTTCCTATTACAAATGCAAAGACCCGTGTCTCTATTTTGAAAGgtatatagtt ... atatgatcagCCCAGCAGCTTGAGAGAGACTTGAGTGCTGCAGCCACAGAATCAGTTGCTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaactttttagttttctatttgtggacaactctttaattgagttatatgatcagCCCAGCAGCTTGAGAGAGACTTGAGTGCTGCAGCCACAGAATCAGTTGCTGCTGACAAAAAGCTTGCTATATTTGATAAAATATTTTCTGCATACCATGA
                                ctttaat  putative branch site (score: 4)
     tttttagttttctatt  TA-rich tract