1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaaacttgctttgtttaatctaatttccttgggtattgatacagcaaaagctcacatttgtttgtttattttcccagTTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTCTGCTCCTGATATTGCTGGCAAG
species | Zea mays |
transcript | GRMZM2G120857_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAG TTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTCEST: gi|76019790|gb|DT946960.1|DT946960
genomic: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAGgtaaacttgc ... attttcccagTTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
EST: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAG TTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTCEST: gi|211101475|gb|FL457329.1|FL457329
genomic: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAGgtaaacttgc ... attttcccagTTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
EST: ATTAGTGATCTATGTGCTGG-TTGATCGGGGGCTTGGGCCTAACACCCAG TTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTCEST: gi|110194437|gb|EC876335.1|EC876335
genomic: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAGgtaaacttgc ... attttcccagTTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
EST: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAG TTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTCEST: gi|211216460|gb|FL469131.1|FL469131
genomic: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAGgtaaacttgc ... attttcccagTTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
EST: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAG TTGCAATATTGGTGAAGGTGGCATTT-TCTGGCAGAAGCTGTTCATGGTTCEST: gi|31250098|gb|CD219122.1|CD219122
genomic: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAGgtaaacttgc ... attttcccagTTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
EST: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAG TTGTAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTCEST: gi|74239665|gb|DT647579.1|DT647579
genomic: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAGgtaaacttgc ... attttcccagTTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
EST: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAG TTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTCEST: gi|23199568|gb|BU582133.1|BU582133
genomic: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAGgtaaacttgc ... attttcccagTTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
EST: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAG TTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTCEST: gi|87155757|gb|DY400546.1|DY400546
genomic: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAGgtaaacttgc ... attttcccagTTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
EST: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAG TTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTCEST: gi|29544695|gb|CB605075.1|CB605075
genomic: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAGgtaaacttgc ... attttcccagTTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
EST: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAG TTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTCEST: gi|32915735|gb|CF020547.1|CF020547
genomic: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAGgtaaacttgc ... attttcccagTTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
EST: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAG TTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTCEST: gi|33103704|gb|CF063664.1|CF063664
genomic: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAGgtaaacttgc ... attttcccagTTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
EST: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAG TTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTCEST: gi|16925630|gb|BM078698.1|BM078698
genomic: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAGgtaaacttgc ... attttcccagTTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
EST: CGGGGGCTTGGGCCTAACACCCAG TTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTCEST: gi|211039065|gb|FL478477.1|FL478477
genomic: CGGGGGCTTGGGCCTAACACCCAGgtaaacttgc ... attttcccagTTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
EST: AGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAG TTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTCEST: gi|29167895|gb|CB411155.1|CB411155
genomic: AGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAGgtaaacttgc ... attttcccagTTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
EST: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAG TTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTCEST: gi|9731686|gb|BE510438.1|BE510438
genomic: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAGgtaaacttgc ... attttcccagTTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
EST: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAG TTGCAATATTGEST: gi|211333619|gb|FL125157.1|FL125157
genomic: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAGgtaaacttgc ... attttcccagTTGCAATATTG
EST: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAG TTGCAATATTGGTGAAGGEST: gi|166704216|gb|EG154128.1|EG154128
genomic: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAGgtaaacttgc ... attttcccagTTGCAATATTGGTGAAGG
EST: CCTAACACCCAG TTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTCEST: gi|37381420|gb|CF627593.1|CF627593
genomic: CCTAACACCCAGgtaaacttgc ... attttcccagTTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
EST: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAG TTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTCEST: gi|37384800|gb|CF629499.1|CF629499
genomic: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAGgtaaacttgc ... attttcccagTTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
EST: NTTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAG TTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTCEST: gi|31250137|gb|CD219161.1|CD219161
genomic: -TTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAGgtaaacttgc ... attttcccagTTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
EST: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAG TTGTAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTCEST: gi|78109385|gb|DV527801.1|DV527801
genomic: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAGgtaaacttgc ... attttcccagTTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
EST: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAG TTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
genomic: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAGgtaaacttgc ... attttcccagTTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
atttccttgggtattgatacagcaaaagctcacatttgtttgtttattttcccagTTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTCTGCTCCTGATATTGCTGGCAAG
agctcac putative branch site (score: 3)
tttgtttattttccc putative PPT
atttgtttgtttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaacttgctttgtttaatctaatttccttgggtattgatacagcaaaagctcacatttgtttgtttattttcccagTTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTCTGCTCCTGATATTGCTGGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT