1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatgttgataatcccatgagccatgatgactatgttatttgttgatatctgccgattgctgaggtttcctgttgttttagatattggtaatcctttcagtttgtgagctctaattccatatgtaacaattgtttttcttccactttcagCTGTGGAGTTCTTGAGAAATGCTCCTGAAGGGACATATGATGCTATCATTGTTGATTCATCTGACCCAATAG
species | Zea mays |
transcript | GRMZM2G120578_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTTGTCTGTTGGATTTGAAGATCCTCGTGTTCAACTTCATGTTGGTGACG CTGTGGAGTTCTTGAGAAATGCTCCTGAAGGGACATATGATGCTATCATTGEST: gi|32866078|gb|CF005760.1|CF005760
genomic: TTTGTCTGTTGGATTTGAAGATCCTCGTGTTCAACTTCATGTTGGTGACGgtatgttgat ... ccactttcagCTGTGGAGTTCTTGAGAAATGCTCCTGAAGGGACATATGATGCTATCATTG
EST: TTTGTCTGTTGGATTTGAAGATCCTCGTGTTCAACTTCATGTTGGTGACG CTGTGGAGTTCTTGAGAAATGCTCCTGAAGGGACATATGATGCTATCATTGEST: gi|211227788|gb|FL398706.1|FL398706
genomic: TTTGTCTGTTGGATTTGAAGATCCTCGTGTTCAACTTCATGTTGGTGACGgtatgttgat ... ccactttcagCTGTGGAGTTCTTGAGAAATGCTCCTGAAGGGACATATGATGCTATCATTG
EST: TGTCTGTTGGATTTGAAGATCCTCGTGTTCAACTTCATGTTGGTGACG CTGTGGAGTTCTTGAGAAATGCTCCTGAAGGGACATATGATGCTATCATTG
genomic: TGTCTGTTGGATTTGAAGATCCTCGTGTTCAACTTCATGTTGGTGACGgtatgttgat ... ccactttcagCTGTGGAGTTCTTGAGAAATGCTCCTGAAGGGACATATGATGCTATCATTG
ttcagtttgtgagctctaattccatatgtaacaattgtttttcttccactttcagCTGTGGAGTTCTTGAGAAATGCTCCTGAAGGGACATATGATGCTATCATTGTTGATTCATCTGACCCAATAG
atgtaac putative branch site (score: 3)
ttgtttttcttccact putative PPT
taacaattgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttgataatcccatgagccatgatgactatgttatttgttgatatctgccgattgctgaggtttcctgttgttttagatattggtaatcctttcagtttgtgagctctaattccatatgtaacaattgtttttcttccactttcagCTGTGGAGTTCTTGAGAAATGCTCCTGAAGGGACATATGATGCTATCATTGTTGATTCATCTGACCCAATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG