1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaaggttctcctttggtgtcttaaccttaagtgtagtcacttagttatacttcgctgatatacatcttatttcttagATCTGCAAGGAATTCTTCCCACATTTGTCTGTTGGATTTGAAGATCCTCGTGTTCAACTTCATGTTGGTGACG
species | Zea mays |
transcript | GRMZM2G120578_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTTCAGTGGAGTCTATTGACATATGTGAAATTGATCAGCTGGTTATTGAT ATCTGCAAGGAATTCTTCCCACATTTGTCTGTTGGATTTGAAGATCCTCGTEST: gi|148956445|gb|EC902269.2|EC902269
genomic: GTTCAGTGGAGTCTATTGACATATGTGAAATTGATCAGCTGGTTATTGATgtaaggttct ... tatttcttagATCTGCAAGGAATTCTTCCCACATTTGTCTGTTGGATTTGAAGATCCTCGT
EST: GTTCAGTGGAGTCTATTGACATATGTGAAATTGATCAGCTGGTTATTGAT ATCTGCAAGGAATTCTTCCCACATTTGTCTEST: gi|78117805|gb|DV536192.1|DV536192
genomic: GTTCAGTGGAGTCTATTGACATATGTGAAATTGATCAGCTGGTTATTGATgtaaggttct ... tatttcttagATCTGCAAGGAATTCTTCCCACATTTGTCT
EST: GTTCAGTGGAGTCTATTGACATATGTGAAATTGATCAGCTGGTTATTGAT ATCTGCAAGGAATTCTTCCCACATTTGTCTGTTGGATTTGAAGATTCTCGTEST: gi|148930370|gb|EE284813.2|EE284813
genomic: GTTCAGTGGAGTCTATTGACATATGTGAAATTGATCAGCTGGTTATTGATgtaaggttct ... tatttcttagATCTGCAAGGAATTCTTCCCACATTTGTCTGTTGGATTTGAAGATCCTCGT
EST: GTTCAGTGGAGTCTATTGACATATGTGAAATTGATCAGCTGGTTATTGAT ATCTGCAAGGAATTCTTCCCACATTTGTCTGTTGGATTTGAAGATCCTCGTEST: gi|211322829|gb|FL013195.1|FL013195
genomic: GTTCAGTGGAGTCTATTGACATATGTGAAATTGATCAGCTGGTTATTGATgtaaggttct ... tatttcttagATCTGCAAGGAATTCTTCCCACATTTGTCTGTTGGATTTGAAGATCCTCGT
EST: GTTCAGTGGAGTCTATTGACATATGTGAAATTGATCAGCTGGGTATTGAT ATCTGCAAGGAATTCT-CCCACATTTGTCTGTTGGATTGGA-GATCCTCGTEST: gi|148963955|gb|EE015081.2|EE015081
genomic: GTTCAGTGGAGTCTATTGACATATGTGAAATTGATCAGCTGGTTATTGATgtaaggttct ... tatttcttagATCTGCAAGGAATTCTTCCCACATTTGTCTGTTGGATTTGAAGATCCTCGT
EST: GTTCAGTGGAGTCTATTGACATATGTGAAATTGATCAGCTGGTTATTGAT ATCTGCAAGGAATTCTTCCCACATTTGTCTGTTGGATTTGAAGATCCTCGT
genomic: GTTCAGTGGAGTCTATTGACATATGTGAAATTGATCAGCTGGTTATTGATgtaaggttct ... tatttcttagATCTGCAAGGAATTCTTCCCACATTTGTCTGTTGGATTTGAAGATCCTCGT
aaccttaagtgtagtcacttagttatacttcgctgatatacatcttatttcttagATCTGCAAGGAATTCTTCCCACATTTGTCTGTTGGATTTGAAGATCCTCGTGTTCAACTTCATGTTGGTGACG
tcttatttctt CT-rich tract
atatacatcttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggttctcctttggtgtcttaaccttaagtgtagtcacttagttatacttcgctgatatacatcttatttcttagATCTGCAAGGAATTCTTCCCACATTTGTCTGTTGGATTTGAAGATCCTCGTGTTCAACTTCATGTTGGTGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA