1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagtaatttttcatttcatttccagtctcctgcatctatctgttatttaatgcctgatgttcctctatgcagAGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAGGAATATGCTGCAAATGCAGCTGAGCTGCGTAATAAGAATATACCCACGG
species | Zea mays |
transcript | GRMZM2G120300_T03 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTG AGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGEST: gi|211480476|gb|FL101272.1|FL101272
genomic: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTGgtgagtaatt ... ctctatgcagAGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGG
EST: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTG AGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAGEST: gi|149026716|gb|EE046118.2|EE046118
genomic: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTGgtgagtaatt ... ctctatgcagAGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAG
EST: AGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTTG AGTAATGCAAAGTTTGC
genomic: AGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTT-Ggtgagtaatt ... ctctatgcagAGTAATGCAAAGTTTGC
atttccagtctcctgcatctatctgttatttaatgcctgatgttcctctatgcagAGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAGGAATATGCTGCAAATGCAGCTGAGCTGCGTAATAAGAATATACCCACGG
gcctgat putative branch site (score: 253)
tgttcctct CT-rich tract
tatctgttatttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtaatttttcatttcatttccagtctcctgcatctatctgttatttaatgcctgatgttcctctatgcagAGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAGGAATATGCTGCAAATGCAGCTGAGCTGCGTAATAAGAATATACCCACGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC