1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagtaatttttcatttcatttccagtctcctgcatctatctgttatttaatgcctgatgttcctctatgcagAGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAGGAATATGCTGCAAATGCAGCTGAGCTGCGTAATAAGAATATACCCACG
species | Zea mays |
transcript | GRMZM2G120300_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTG AGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAGEST: gi|111991062|gb|EE331971.1|EE331971
genomic: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTGgtgagtaatt ... ctctatgcagAGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAG
EST: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTG AGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAGEST: gi|32925422|gb|CF030234.1|CF030234
genomic: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTGgtgagtaatt ... ctctatgcagAGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAG
EST: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTG AGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAGEST: gi|32831167|gb|CD970845.1|CD970845
genomic: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTGgtgagtaatt ... ctctatgcagAGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAG
EST: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTG AGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAGEST: gi|32926516|gb|CF031328.1|CF031328
genomic: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTGgtgagtaatt ... ctctatgcagAGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAG
EST: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTG AGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAGEST: gi|89755327|gb|DY685795.1|DY685795
genomic: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTGgtgagtaatt ... ctctatgcagAGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAG
EST: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCAGGAATATACCTTG AGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAGEST: gi|76912678|gb|DV164843.1|DV164843
genomic: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTGgtgagtaatt ... ctctatgcagAGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAG
EST: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTG AGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAGEST: gi|32925540|gb|CF030352.1|CF030352
genomic: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTGgtgagtaatt ... ctctatgcagAGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAG
EST: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTG AGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAGEST: gi|78113025|gb|DV531419.1|DV531419
genomic: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTGgtgagtaatt ... ctctatgcagAGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAG
EST: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTG AGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGEST: gi|76290102|gb|DV029670.1|DV029670
genomic: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTGgtgagtaatt ... ctctatgcagAGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGG
EST: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTG AGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAGEST: gi|32831772|gb|CD971450.1|CD971450
genomic: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTGgtgagtaatt ... ctctatgcagAGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAG
EST: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTG AGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAGEST: gi|60400379|gb|DN233186.1|DN233186
genomic: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTGgtgagtaatt ... ctctatgcagAGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAG
EST: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTG AGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAGEST: gi|60356731|gb|DN223704.1|DN223704
genomic: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTGgtgagtaatt ... ctctatgcagAGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAG
EST: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTG AGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAGEST: gi|78113024|gb|DV531418.1|DV531418
genomic: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTGgtgagtaatt ... ctctatgcagAGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAG
EST: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTG AGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAGEST: gi|32926815|gb|CF031627.1|CF031627
genomic: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTGgtgagtaatt ... ctctatgcagAGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAG
EST: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTG AGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAGEST: gi|5770170|gb|AI973344.1|AI973344
genomic: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTGgtgagtaatt ... ctctatgcagAGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAG
EST: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTG AGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAGEST: gi|60359081|gb|DN226054.1|DN226054
genomic: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTGgtgagtaatt ... ctctatgcagAGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAG
EST: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTG AGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAGEST: gi|149112937|gb|EE295730.2|EE295730
genomic: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTGgtgagtaatt ... ctctatgcagAGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAG
EST: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTG AGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAGEST: gi|211480476|gb|FL101272.1|FL101272
genomic: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTGgtgagtaatt ... ctctatgcagAGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAG
EST: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTG AGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAGEST: gi|6445407|gb|AW179475.1|AW179475
genomic: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTGgtgagtaatt ... ctctatgcagAGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAG
EST: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTG AGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAGEST: gi|148947425|gb|EC892845.2|EC892845
genomic: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTGgtgagtaatt ... ctctatgcagAGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAG
EST: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTG AGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAGEST: gi|60352578|gb|DN219551.1|DN219551
genomic: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTGgtgagtaatt ... ctctatgcagAGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAG
EST: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTG AGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAGEST: gi|149026716|gb|EE046118.2|EE046118
genomic: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTGgtgagtaatt ... ctctatgcagAGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAG
EST: AGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTTG AGTAATGCAAAGTTTGCEST: gi|149103111|gb|EE288478.2|EE288478
genomic: AGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTT-Ggtgagtaatt ... ctctatgcagAGTAATGCAAAGTTTGC
EST: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTG AGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAGEST: gi|67017612|gb|CO446361.1|CO446361
genomic: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTGgtgagtaatt ... ctctatgcagAGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAG
EST: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTG AGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAGEST: gi|60399854|gb|DN232664.1|DN232664
genomic: CAGCTCTACCCGATGATACAAAAGTATACTGTGGGCATGAATATACCTTGgtgagtaatt ... ctctatgcagAGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAG
EST: AAAAGTATACTGTGGGCATGAATATACCTTG AGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAG
genomic: AAAAGTATACTGTGGGCATGAATATACCTTGgtgagtaatt ... ctctatgcagAGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAG
atttccagtctcctgcatctatctgttatttaatgcctgatgttcctctatgcagAGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAGGAATATGCTGCAAATGCAGCTGAGCTGCGTAATAAGAATATACCCACG
gcctgat putative branch site (score: 4)
tgttcctct CT-rich tract
tatctgttatttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtaatttttcatttcatttccagtctcctgcatctatctgttatttaatgcctgatgttcctctatgcagAGTAATGCAAAGTTTGCCTTGAGTGTAGAACCGGGAAATAAAGCATTGCAGGAATATGCTGCAAATGCAGCTGAGCTGCGTAATAAGAATATACCCACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC