1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tatgagttgtccaagagctgtgctgacaaattttattttcttcaagtatcaatgtggcatagccattggttactgatatctgttatgttttcatctgcagAAATATGCAAAACATGTTGGATTGAAAAGAGACTTTCGACTGGTTGTCCGGGGTGCTGCTCGAAATATGGCACCAATACTGAAGGGCTCCTGTAATGCTG
species | Zea mays |
transcript | GRMZM2G119791_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGATGCGCATGACGCCGTGTTTCGGGACAATGAGGCACCTGTCAATAAG AAATATGCAAAACATGTTGGATTGAAAAGAGACTTTCGACTGGTTGTCCNGEST: gi|78092057|gb|DV520431.1|DV520431
genomic: TTGATGCGCATGACGCCGTGTTTCGGGACAATGAGGCACCTGTCAATAAGgtaaacatgt ... tcatctgcagAAATATGCAAAACATGTTGGATTGAAAAGAGACTTTCGACTGGTTGTCCGG
EST: TGATGCGCATGACGCCGTGTTTCGGGACAATGAGGCACCCTGTCA-TAAG AAATATGCAAAACATGTTGGATTGAAAAGAGACTTTCGACTGGTTGTCCGGEST: gi|71428024|gb|DR809074.1|DR809074
genomic: TGATGCGCATGACGCCGTGTTTCGGGACAATGAGGCACC-TGTCAATAAGgtaaacatgt ... tcatctgcagAAATATGCAAAACATGTTGGATTGAAAAGAGACTTTCGACTGGTTGTCCGG
EST: TTGATGCGCATGACGCCGTGTTTCGGGACAATGAGGCACCTGTCAATAAG AAATATGCAAAACATGTTGGATTGAAAAGAGACTTTCGACTGGTTGTCCGG
genomic: TTGATGCGCATGACGCCGTGTTTCGGGACAATGAGGCACCTGTCAATAAGgtaaacatgt ... tcatctgcagAAATATGCAAAACATGTTGGATTGAAAAGAGACTTTCGACTGGTTGTCCGG
gtatcaatgtggcatagccattggttactgatatctgttatgttttcatctgcagAAATATGCAAAACATGTTGGATTGAAAAGAGACTTTCGACTGGTTGTCCGGGGTGCTGCTCGAAATATGGCACCAATACTGAAGGGCTCCTGTAATGCTG
tactgat putative branch site (score: 2)
ttttcatct putative PPT
ttatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgagttgtccaagagctgtgctgacaaattttattttcttcaagtatcaatgtggcatagccattggttactgatatctgttatgttttcatctgcagAAATATGCAAAACATGTTGGATTGAAAAGAGACTTTCGACTGGTTGTCCGGGGTGCTGCTCGAAATATGGCACCAATACTGAAGGGCTCCTGTAATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG