Sequence
atgc intronic sequence ATGC exonic sequencegtaactgacagactggcaccttacctacttaagctcagtgtatcaaacttctgaactctgggactgatgtacagtagatccacatcgtgattaaacttgtagtcactttatttgaaatgagcatgtagtcctttcttccaatttcacgtaagtttcttttatagTTTTCAGACAAATTCACCATTATGTTGTTCCATTATGATGGTCGGACTACAGAGTGGGATGAATTTGAGTGGTCTAAAAGAGCAATCCATGTGAGTGCCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G119725_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os02g19510.3 (Oryza sativa), 3'ss of exon 5
gtaactgacagactggcaccttac-ctacttaagctcagtgtatcaaacttctgaactctgggactgatgtacagtagatcc-acatcgtgattaaacttgtagtcactttatttgaa-atgagcatgtagtcctttcttccaatttcacgtaagtttcttttatagTTTTCAGACAAATTCACCATTATGTTGTTCCATTATGATGGTCGGACTACAGAGTGGGATGAATTTGAGTGGTCTAAAAGAGCAATCCATGTGAGTGCCA
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gtaactga--gacggacatcttgcattgcttaaatttggtgcatcaatcaactataccctgtaacagataaacagttaatcttgcattccggt-gaactggtagtcactttttcttaatgtaaatatgcaattattgcttctgaattcatagaagcttttcatatagTTTTCAGATAAATTCACTATCATGCTATTCCATTATGATGGCCGGACTACTGAATGGGATGAATTTGAGTGGTCTAAAAGAGCTATCCATGTGAGTGTCA
upper sequence: GRMZM2G119725_T02 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA12G29800.1 (Glycine max), 3'ss of exon 6
gtaactgacagactggcaccttacctacttaagctcagtgtatcaaacttctgaactctgggactgatgtacagtagatccacatcgtgattaaacttgtagtcactttatttgaaatgagcatgtagtcctttcttccaatttcacg----taagtttcttttatagTTTTCAGACAAATTCACCATTATGTTGTTCCATTATGATGGTCGGACTACAGAGTGGGATGAATTTGAGTGGTCTAAAAGAGCAATCCATGTGAGTGCCA
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-----------------------------------------------------------gttattgagattgactaccttcatat----ataagaatt-tatttg-tatatct------accatttcttattttcttcaaaattgctgactatcaaattgttctgtagTTTTCTGATGATTTTGCAATTTTGCTCTTTCATTATGATGGTCGGACTAGTGAATGGGATCAATTTGAGTGGTCAAGGAATGCAATCCATGTTAGTGCAA
upper sequence: GRMZM2G119725_T02 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA13G39990.1 (Glycine max), 3'ss of exon 6
gtaactgacagactggcaccttacctacttaagctcagtgtatcaaacttctgaactctgggactgatgtacagtagatccacat-cgtgattaaacttgtagtcactttatttgaaatgagcatgtagtcctttcttccaatttcacgtaagtttcttttatagTTTTCAGACAAATTCACCATTATGTTGTTCCATTATGATGGTCGGACTACAGAGTGGGATGAATTTGAGTGGTCTAAAAGAGCAATCCATGTGAGTGCCA
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-----------------------------------------------------------gttattgatattgactaccttcatatatatgaatttatttgtatatctaccatttcatat-----tttcttcaagattgctgact----atcaaattgttctgtagTTTTCTGATGATTTTGCAATTTTGCTCTTTCATTATGATGGTCGGACTAGTGAATGGGATCAATTTGAGTGGTCAAGGAGTGCAATCCATGTCAGCGCAA
upper sequence: GRMZM2G119725_T02 (Zea mays), 3'ss of exon 6
lower sequence: AT1G08040.1 (Arabidopsis thaliana), 3'ss of exon 6
gtaactgacagactggcaccttacctacttaagctcagtgtatcaaacttctgaactctgggactgatgtacagtagatccacatcgtgattaaacttgtagtcactttatttgaa-atgagcatgtagtcctttcttccaatttcacgtaagtttcttttatagTTTTCAGACAAATTCACCATTATGTTGTTCCATTATGATGGTCGGACTACAGAGTGGGATGAATTTGAGTGGTCTAAAAGAGCAATCCATGTGAGTGCCA
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-----------------------------------------------------------------gttctgcaacaatttctcccc----tcttgtttgtaaac----tatttgagtattgacacttaaagatttttgc---tttcatcatcattgcttc---agTTTTCTGAAGATTTCCAAATATTGTTATTCCATTATGATGGCCGAACAACTGAGTGGGACCAGTTTGAGTGGTCTAAAAATGCAATACATATCAGTGCAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|148930418|gb|EE284901.2|EE284901EST: TTACTGTTGGTATTGGGCAAAAGGCAAATATTGATGCAGCGGTCAGAAAG TTTTCAGAAAAAATCACCATTATGTTGTTCCATTATGATGGT
genomic: TTACTGTTGGTATTGGGCAAAAGGCAAATATTGATGCAGCGGTCAGAAAGgtaactgaca ... tcttttatagTTTTCAGACAAATTCACCATTATGTTGTTCCATTATGATGGT
EST:
gi|211445045|gb|FL132441.1|FL132441EST: TTACTGTTGGTATTGGGCAAAAGGCAAATATTGATGCAGCGGTCAGAAAG TTTTCAGACAAATTCACCATTATGTTGTTCCATTATGATGGTCGGACTACA
genomic: TTACTGTTGGTATTGGGCAAAAGGCAAATATTGATGCAGCGGTCAGAAAGgtaactgaca ... tcttttatagTTTTCAGACAAATTCACCATTATGTTGTTCCATTATGATGGTCGGACTACA
EST:
gi|148961302|gb|EE012027.2|EE012027EST: TTACTGTTGGTATTGGGCAAAAGGCAAATATTGATGCAGCGGTCAGAAAG TTTTCAGACAAATTCACCATTATGTTG
genomic: TTACTGTTGGTATTGGGCAAAAGGCAAATATTGATGCAGCGGTCAGAAAGgtaactgaca ... tcttttatagTTTTCAGACAAATTCACCATTATGTTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atttgaaatgagcatgtagtcctttcttccaatttcacgtaagtttcttttatagTTTTCAGACAAATTCACCATTATGTTGTTCCATTATGATGGTCGGACTACAGAGTGGGATGAATTTGAGTGGTCTAAAAGAGCAATCCATGTGAGTGCCA
tttcttttat CT-rich tract
taagtttcttttata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaactgacagactggcaccttacctacttaagctcagtgtatcaaacttctgaactctgggactgatgtacagtagatccacatcgtgattaaacttgtagtcactttatttgaaatgagcatgtagtcctttcttccaatttcacgtaagtttcttttatagTTTTCAGACAAATTCACCATTATGTTGTTCCATTATGATGGTCGGACTACAGAGTGGGATGAATTTGAGTGGTCTAAAAGAGCAATCCATGTGAGTGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA