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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcagagatcatttttcttcttcttcttctcacagccgagttagttctgttctgtcgagtgagaccggcctgtactgtactgtgtctctgtatctgttgttgcagAGGAGTCAAGTACCACGAGCCAGAGTACTGGAAGTTCGGCGACGAGGGCAACAAGTACTTCCGCCACGCCACCGGCCAAATCTACGCCATCTCCAAGGAC

Basic information

species Zea mays
transcript GRMZM2G119265_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G119265_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os01g65590.1 (Oryza sativa), 3'ss of exon 6
gtgagcagagatcatttttcttcttcttcttctcacagccgagttagttctgttctgtcgagtgagaccggcctgtactgtactgtgtctctgtatctgttgttgcagAGGAGTCAAGTACCACGAGCCAGAGTACTGGAAGTTCGGCGACGAGGGCAACAAGTACTTCCGCCACGCCACCGGCCAAATCTACGCCATCTCCAAGGAC
||||||| |      ||    |||| |  ||            ||  |  |   |||  |  || ||      ||| | ||  | |||   |||    |||||||||| ||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||| 
gtgagcaaatggagattaaaatcttgtgttttgt---------ttgttggtagcctgatgcatg-gatgaatttgt-cggtgttttgttgttgt--tcgttgttgcagGGGAGTGAAGTACCACGAGCCGGAGTACTGGAAGTTCGGGGACGAGGGGAACAAGTACTTCCGCCACGCCACCGGCCAAATCTACGCCGTTTCCAAGGAT

upper sequence: GRMZM2G119265_T02 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA12G00530.1 (Glycine max), 3'ss of exon 5
gtgagcagagatcatttttcttcttcttcttctcacagccgagttagttctgttctgtcgagtgagaccggcctgtactgtactgtgtctctgtatctgttgttgcagAGGAGTCAAGTACCACGAGCCAGAGTACTGGAAGTTCGGCGACGAGGGCAACAAGTACTTCCGCCACGCCACCGGCCAAATCTACGCCATCTCCAAGGAC
|||||         |  ||  || |    |  | |  |     ||| |  |||| |||  | |||         ||| | |    | |   | | | ||| || |||||||||| ||||| || ||| | ||| |||||||||| || || || || |||||||| ||  | || ||||| |||||||| || |||||||||||||| 
gtgaggtttctctttaattagtcattcattgttgaaggaaatattaatgttgttttgt-aaatgaa--------gtaatatctcattttaatttgtgtgt-gtggcagAGGAGTAAAGTATCATGAGGCTGAGAACTGGAAGTTTGGAGAGGAAGGAAACAAGTATTTTAGGCATGCCACTGGCCAAATATATGCCATCTCCAAGGAT

upper sequence: GRMZM2G119265_T02 (Zea mays), 3'ss of exon 6
lower sequence: EFJ30358 (Selaginella moellendorffii), 3'ss of exon 8
gtgagcagagatcatttttcttcttcttcttctcacagccgagttagttctgttctgtcgagtgagaccggc-ctgtactgtactgtgtctctgtatct-gttgttgcagAGGAGTCAAGTACCACGAGCCAGAGTACTGGAAGTTCGGCGACGAGGGCAACAAGTACTTCCGCCACGCCACCGGCCAAATCTACGCCATCTCCAAGGAC
                                                            ||||| | | || ||| |       |  | |   |  || ||| || ||| || |||||||| ||||||||||| ||||||||||| || || || || ||||  ||||| |||||||| || || ||  | || |  || || ||||| 
---------------------------------------------------------gtaagtgacatccgctctgaaactggtagattttaaatgcctcgttcttccagGGGTGTCAAGTATCACGAGCCAGAATACTGGAAGTTTGGTGAAGACGGTAACAGATACTTTCGCCACGCAACAGGTCAGTTGTATGTGATTTCAAAGGAT

upper sequence: GRMZM2G119265_T02 (Zea mays), 3'ss of exon 6
lower sequence: EFJ28470 (Selaginella moellendorffii), 3'ss of exon 8
gtgagcagagatcatttttcttcttcttcttctcacagccgagttagttctgttctgtcgagtgagaccggcctgtactgtactgtgtctctgtatctgttgttgcagAGGAGTCAAGTACCACGAGCCAGAGTACTGGAAGTTCGGCGACGAGGGCAACAAGTACTTCCGCCACGCCACCGGCCAAATCTACGCCATCTCCAAGGAC
                                          || |||    |||  ||   ||| || ||    |  |  |   || |||       ||| || ||| || |||||||| ||||||||||| ||||||||||| || || || || ||||  ||||| |||||||| || || ||  | || || || || ||||| 
------------------------------------------gtaagtgacattcgctc---tgaaactggtagattttaaa---tgcctc-------gttcttccagGGGCGTCAAGTATCACGAGCCAGAATACTGGAAGTTTGGTGAAGACGGTAACAGATACTTTCGCCACGCAACAGGTCAGTTGTATGCGATTTCAAAGGAT