Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgtgcattgatactctgtccattgatttcatgtttgtttaatatttctttttatcattttccattttccgtcctcacccagagaataatttccaccaagtgtatctcattgtgattgctgtgtgcagATATGCTAGAGAGGATACACACTATCTGCTATATATATATGACCTGATGAGATTGAGACTAGTGAATGGGTCATCATGTGAAAATGATCTTCTTTTAGAG

Basic information

species Zea mays
transcript GRMZM2G118917_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G118917_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os10g30100.1 (Oryza sativa), 3'ss of exon 6
gtactgtgcattgat-actctgtccattgatttcatgtttgtttaatatttctttttatcattttccattttccgtcctcacccagagaataatttccaccaagtgtatctcattgtgattgctgtgtgcagATATGCTAGAGAGGATACACACTATCTGCTATATATATATGACCTGATGAGATTGAGACTAGTGAATGGGTCATCATGTGAAAATGATCTTCTTTTAGAG
|||   | | ||  | |  |    |||  ||||| |  |  ||  || ||     |   || |||   |     |  ||   |  |   || ||||||| ||| |||| || ||| ||  | || |||  || ||||||||||| |||||||| |||||||| || ||||||||  |||||||| | ||||| ||||| | ||| |||  ||||||||||||||||||||||
gtagactacctttctgaaacccctcatgaatttccttctatttccatgttatacatc--cactttttgtcgatggctctactctcgctgatcatttccatcaaatgtacctgattatgccttctttgtttagGTATGCTAGAGAAGATACACATTATCTGCTTTACATATATGATTTGATGAGACTCAGACTGGTGAAAGAGTCTTCAGATGAAAATGATCTTCTTTTAGAG

upper sequence: GRMZM2G118917_T02 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA17G24130.1 (Glycine max), 3'ss of exon 7
gtactgtgcattgatactctgtccattgatttcatgtttgtttaatatttctttttatcattttccattttccgtcctc----acccagagaataatttccaccaagtgtatctcattgtgattgctgtgtgcagATATGCTAGAGAGGATACACACTATCTGCTATATATATATGACCTGATGAGATTGAGACTAGTGAATGGGTC-ATCATGTGAAAATGATCTTCTTTTAGAG
                                | ||||| | |    |||   || || |||         | ||| |     | | |   | |||||   ||  | | ||  | | |||  |||   ||  ||||||||| ||||| ||||||||||||||| | |||||||| ||| | |||||  | |   || |      ||| |    ||   || | |||   | |  | 
--------------------------------cttgtttatcttggttttagcttgatgattactggcacactgtcatgggcaatctaattagtaattattac--aatctaattaactgtttttgtgatg-acagATATGCCAGAGAAGATACACACTATCTGTTGTATATATACGACTTAATGAGGATTAAGTTATTTGCCTTGTCTAAGGAGTCTGAAAGTTCTGAGTCTTCA-

upper sequence: GRMZM2G118917_T02 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA05G13920.1 (Glycine max), 3'ss of exon 6
gtactgtgcattgatactctgtccattgatttcatgtttgtttaatatttctttttatcattttccattttccgtcctcacccagagaataatttccaccaagtgtatctcattgtgattgctgtgtgcagATATGCTAGAGAGGATACACACTATCTGCTATATATATATGACCTGATGAG-ATTGAGAC-TAGTGAATGGGTCATCA-TGTGAAAATGATCTTCTTTTAGAG
                        ||| ||| | ||   | ||  ||||   ||  ||  ||  |  | | | ||   ||   | |   ||||| |     | | |||   ||| | |||  |     ||||||||| ||||| |||||||| ||||||||||| ||||||||  | ||||| ||||||   |  |  |||  | |  |   ||||| || |     |  |   
-----------------------aatttattccttg--agcttgctattagcttg-atagttaccagtatactgt---catggacaccctaattactgt--aatctattgaattattattttttatgacagATATGCCAGAGAAGATACACATTATCTGCTATACATATATGATTTCATGAGGATTGAGTTATTTTCCATGCTTAAGGAGCCTGAAAGTGTTGACGCTCCA---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211507738|gb|FL332402.1|FL332402
EST:     TACCAAGCTGCAGATTGGAGATTGAGGCCCCTTCCTGATGAAATGATCAA                         ATATGCTAGAGAGGATACACACTATCTGCTATATATATATGACCTGATGAG
genomic: TACCAAGCTGCAGATTGGAGATTGAGGCCCCTTCCTGATGAAATGATCAAgtactgtgca ... ctgtgtgcagATATGCTAGAGAGGATACACACTATCTGCTATATATATATGACCTGATGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcacccagagaataatttccaccaagtgtatctcattgtgattgctgtgtgcagATATGCTAGAGAGGATACACACTATCTGCTATATATATATGACCTGATGAGATTGAGACTAGTGAATGGGTCATCATGTGAAAATGATCTTCTTTTAGAG
 tcctcac  putative branch site (score: 2)
         agaataattt  TA-rich tract