Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtatccttttacatggtcatggtcaaaacattctctcgcagttttcatatacaacgactaagatcaatttctgcaaatattttagttttgaatatctctgcaccttgtctccttaacctgctgcactcttgcacagACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGTCCGTCCACCAGCCAATGGCAACAGCGGGTCTGGTGTGTTTAGAGGAAGA

Basic information

species Zea mays
transcript GRMZM2G117388_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G117388_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os05g09550.3 (Oryza sativa), 3'ss of exon 5
gtgtatccttttacatgg--tcatggtcaaaacattctctcgcagttttcatatacaacgactaagatcaatttctgcaaatattttagttttgaatatctctgcaccttgtctccttaacctgctgcactcttgcacagACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGTCCGTCCACCAGCCAATGGCAACAGCGGGTCTGGTGTGTTTAGAGGAAGA---
|| |    ||||| ||||  |||||| |||| ||||      || |               | | | |||||  || | | || | || ||| ||   |    || || ||  ||||||||         |  || |||||||||||||||||||||||||||| |||||  |||| |||||| | || ||||| ||  | |||   | ||||| ||| || || |  || ||||||||    
gtatccttttttatatgggttcatggccaaagcattt-----caat---------------ccatgttcaatagctactactactatattttcgatggtacacgctccatggttccttaac---------tgctgtacagACATAAGATTGTTGCTCGATTCAGAATAGGTGTGCAGGCGAACGCTCCGGTCCGACCCGCGGCC---GCCAACACCGGATCAGGCGCCTTCAGAGGAAGGAGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21331882|gb|BQ487263.1|BQ487263
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGG                         G
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGgtgtatcctt ... tcttgcacag-
EST: gi|21331882|gb|BQ487263.1|BQ487263
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGG                         G
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGgtgtatcctt ... tcttgcacag-
EST: gi|21331882|gb|BQ487263.1|BQ487263
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGG                         G
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGgtgtatcctt ... tcttgcacag-
EST: gi|166531613|gb|EG309021.1|EG309021
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGG                         T
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGgtgtatcctt ... tcttgcacag-
EST: gi|166531613|gb|EG309021.1|EG309021
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGG                         T
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGgtgtatcctt ... tcttgcacag-
EST: gi|21389975|gb|BQ528024.1|BQ528024
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGG                         G
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGgtgtatcctt ... tcttgcacag-
EST: gi|21389975|gb|BQ528024.1|BQ528024
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGG                         G
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGgtgtatcctt ... tcttgcacag-
EST: gi|21389975|gb|BQ528024.1|BQ528024
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGG                         G
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGgtgtatcctt ... tcttgcacag-
EST: gi|40336279|gb|CK370349.1|CK370349
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGG                         G
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGgtgtatcctt ... tcttgcacag-
EST: gi|40336279|gb|CK370349.1|CK370349
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGG                         G
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGgtgtatcctt ... tcttgcacag-
EST: gi|40336279|gb|CK370349.1|CK370349
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGG                         G
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGgtgtatcctt ... tcttgcacag-
EST: gi|37392930|gb|CF633718.1|CF633718
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGG                         G
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGgtgtatcctt ... tcttgcacag-
EST: gi|37392930|gb|CF633718.1|CF633718
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGG                         G
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGgtgtatcctt ... tcttgcacag-
EST: gi|37392930|gb|CF633718.1|CF633718
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGG                         G
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGgtgtatcctt ... tcttgcacag-
EST: gi|211211598|gb|FL477381.1|FL477381
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAACTACCTCAAGACTCCTAAATGGG                         T
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAAT-GGgtgtatcctt ... tcttgcacag-
EST: gi|211211598|gb|FL477381.1|FL477381
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAACTACCTCAAGACTCCTAAATGGG                         T
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAAT-GGgtgtatcctt ... tcttgcacag-
EST: gi|211191573|gb|FL254973.1|FL254973
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAACTACCTCAAGACTCCTAAATGG                         G
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGgtgtatcctt ... tcttgcacag-
EST: gi|211191573|gb|FL254973.1|FL254973
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAACTACCTCAAGACTCCTAAATGG                         G
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGgtgtatcctt ... tcttgcacag-
EST: gi|211191573|gb|FL254973.1|FL254973
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAACTACCTCAAGACTCCTAAATGG                         G
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGgtgtatcctt ... tcttgcacag-
EST: gi|67030179|gb|CO458928.1|CO458928
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAACTACCTCAAGACTCCTAAATGGG                         T
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAAT-GGgtgtatcctt ... tcttgcacag-
EST: gi|67030179|gb|CO458928.1|CO458928
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAACTACCTCAAGACTCCTAAATGGG                         T
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAAT-GGgtgtatcctt ... tcttgcacag-
EST: gi|16927150|gb|BM080219.1|BM080219
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGG                         T
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAAT-GGgtgtatcctt ... tcttgcacag-
EST: gi|16927150|gb|BM080219.1|BM080219
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGG                         T
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAAT-GGgtgtatcctt ... tcttgcacag-
EST: gi|7135572|gb|AW498154.1|AW498154
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGG                         ACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGT
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGgtgtatcctt ... tcttgcacagACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGT
EST: gi|67018558|gb|CO447307.1|CO447307
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTNCTAAATGG                         G
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGgtgtatcctt ... tcttgcacag-
EST: gi|67018558|gb|CO447307.1|CO447307
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTNCTAAATGG                         G
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGgtgtatcctt ... tcttgcacag-
EST: gi|67018558|gb|CO447307.1|CO447307
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTNCTAAATGG                         G
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGgtgtatcctt ... tcttgcacag-
EST: gi|211211596|gb|FL477379.1|FL477379
EST:     AAGAACTACCTCAAGACTCCTAAATGGG                         T
genomic: AAGAGCTACCTCAAGACTCCTAAAT-GGgtgtatcctt ... tcttgcacag-
EST: gi|211211596|gb|FL477379.1|FL477379
EST:     AAGAACTACCTCAAGACTCCTAAATGGG                         T
genomic: AAGAGCTACCTCAAGACTCCTAAAT-GGgtgtatcctt ... tcttgcacag-
EST: gi|211211597|gb|FL477380.1|FL477380
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAACTACCTCAAGACTCCTAAATGGG                         T
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAAT-GGgtgtatcctt ... tcttgcacag-
EST: gi|211211597|gb|FL477380.1|FL477380
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAACTACCTCAAGACTCCTAAATGGG                         T
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAAT-GGgtgtatcctt ... tcttgcacag-
EST: gi|7135238|gb|AW497985.1|AW497985
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGG                         ACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGT
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGgtgtatcctt ... tcttgcacagACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGT
EST: gi|60397359|gb|DN230175.1|DN230175
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGG                         T
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAAT-GGgtgtatcctt ... tcttgcacag-
EST: gi|60397359|gb|DN230175.1|DN230175
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGG                         T
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAAT-GGgtgtatcctt ... tcttgcacag-
EST: gi|211342720|gb|FL460317.1|FL460317
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAACTACCTCAAGACTCCTAAATGGG                         T
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAAT-GGgtgtatcctt ... tcttgcacag-
EST: gi|211342720|gb|FL460317.1|FL460317
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAACTACCTCAAGACTCCTAAATGGG                         T
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAAT-GGgtgtatcctt ... tcttgcacag-
EST: gi|67029845|gb|CO458594.1|CO458594
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAACTACCTCAAGACTCCTANATGG                         G
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGgtgtatcctt ... tcttgcacag-
EST: gi|67029845|gb|CO458594.1|CO458594
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAACTACCTCAAGACTCCTANATGG                         G
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGgtgtatcctt ... tcttgcacag-
EST: gi|67029845|gb|CO458594.1|CO458594
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAACTACCTCAAGACTCCTANATGG                         G
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGgtgtatcctt ... tcttgcacag-
EST: gi|71438420|gb|DR819470.1|DR819470
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGG                         G
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGgtgtatcctt ... tcttgcacag-
EST: gi|71438420|gb|DR819470.1|DR819470
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGG                         G
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGgtgtatcctt ... tcttgcacag-
EST: gi|71438420|gb|DR819470.1|DR819470
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGG                         G
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGgtgtatcctt ... tcttgcacag-
EST: gi|211342721|gb|FL460318.1|FL460318
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAACTACCTCAAGACTCCTAAATGG                         G
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGgtgtatcctt ... tcttgcacag-
EST: gi|211342721|gb|FL460318.1|FL460318
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAACTACCTCAAGACTCCTAAATGG                         G
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGgtgtatcctt ... tcttgcacag-
EST: gi|211342721|gb|FL460318.1|FL460318
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAACTACCTCAAGACTCCTAAATGG                         G
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGgtgtatcctt ... tcttgcacag-
EST: gi|67040755|gb|CO467010.1|CO467010
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAACTACCTCAAGACTCCTAAATGG                         G
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGgtgtatcctt ... tcttgcacag-
EST: gi|67040755|gb|CO467010.1|CO467010
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAACTACCTCAAGACTCCTAAATGG                         G
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGgtgtatcctt ... tcttgcacag-
EST: gi|67040755|gb|CO467010.1|CO467010
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAACTACCTCAAGACTCCTAAATGG                         G
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGgtgtatcctt ... tcttgcacag-
EST: gi|211265389|gb|FL116395.1|FL116395
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAACTACCTCAAGACTCCTAAATGGG                         T
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAAT-GGgtgtatcctt ... tcttgcacag-
EST: gi|211265389|gb|FL116395.1|FL116395
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAACTACCTCAAGACTCCTAAATGGG                         T
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAAT-GGgtgtatcctt ... tcttgcacag-
EST: gi|71767312|gb|DR965249.1|DR965249
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGG                         G
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGgtgtatcctt ... tcttgcacag-
EST: gi|71767312|gb|DR965249.1|DR965249
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGG                         G
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGgtgtatcctt ... tcttgcacag-
EST: gi|71767312|gb|DR965249.1|DR965249
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGG                         G
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGgtgtatcctt ... tcttgcacag-
EST: gi|60349033|gb|DN216006.1|DN216006
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGG                         T
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAAT-GGgtgtatcctt ... tcttgcacag-
EST: gi|60349033|gb|DN216006.1|DN216006
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGG                         T
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAAT-GGgtgtatcctt ... tcttgcacag-
EST: gi|71767311|gb|DR965248.1|DR965248
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGG                         G
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGgtgtatcctt ... tcttgcacag-
EST: gi|71767311|gb|DR965248.1|DR965248
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGG                         G
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGgtgtatcctt ... tcttgcacag-
EST: gi|71767311|gb|DR965248.1|DR965248
EST:     TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGG                         G
genomic: TGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGgtgtatcctt ... tcttgcacag-

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 209

GCCTGGACTTCTGGGTATCATGGTTGGACATCTCTACTACTTCTTTGCAGTGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGgtgtatcctt ... tcttgcacagACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGTCCGTCCACCAGCCAATGGCAACAGCGGGTCTGGTGTGTTTAGAGGAAGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 212

GCCTGGACTTCTGGGTATCATGGTTGGACATCTCTACTACTTCTTTGCAGTGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGgtgtatcctt ... tcttgcacagACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGTCCGTCCACCAGCCAATGGCAACAGCGGGTCTGGTGTGTTTAGAGGAAGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 212

GCCTGGACTTCTGGGTATCATGGTTGGACATCTCTACTACTTCTTTGCAGTGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGgtgtatcctt ... tcttgcacagACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGTCCGTCCACCAGCCAATGGCAACAGCGGGTCTGGTGTGTTTAGAGGAAGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 899

GCCTGGACTTCTGGGTATCATGGTTGGACATCTCTACTACTTCTTTGCAGTGTTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGgtgtatcctt ... tcttgcacagACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGTCCGTCCACCAGCCAATGGCAACAGCGGGTCTGGTGTGTTTAGAGGAAGA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagttttgaatatctctgcaccttgtctccttaacctgctgcactcttgcacagACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGTCCGTCCACCAGCCAATGGCAACAGCGGGTCTGGTGTGTTTAGAGGAAGA
                             ccttaac  putative branch site (score: 899)
                                          cactctt  putative PPT
     tttgaatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgtatccttttacatggtcatggtcaaaacattctctcgcagttttcatatacaacgactaagatcaatttctgcaaatattttagttttgaatatctctgcaccttgtctccttaacctgctgcactcttgcacagACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGTCCGTCCACCAGCCAATGGCAACAGCGGGTCTGGTGTGTTTAGAGGAAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA