1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatccttttacatggtcatggtcaaaacattctctcgcagttttcatatacaacgactaagatcaatttctgcaaatattttagttttgaatatctctgcaccttgtctccttaacctgctgcactcttgcacagACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGTCCGTCCACCAGCCAATGGCAACAGCGGGTCTGGTGTGTTTAGAGGAAGA
species | Zea mays |
transcript | GRMZM2G117388_T01 |
intron # | 6 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: CGGGAAGAGCTACCTCAAGACTCCTAAATGGGT ACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGTEST: gi|211265389|gb|FL116395.1|FL116395
genomic: CGGGAAGAGCTACCTCAAGACTCCTAAATGGGTgtatcctttt ... tcttgcacagACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGT
EST: TTGCACCCTCTTGCCACCGGGAAGAACTACCTCAAGACTCCTAAATGGGT ACATAAGATTGTTTCTCGATTCAGGATAGGCATGCAAGCAAACTCACCCGTEST: gi|67040755|gb|CO467010.1|CO467010
genomic: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGGTgtatcctttt ... tcttgcacagACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGT
EST: TTGCACCCTCTTGCCACCGGGAAGAACTACCTCAAGACTCCTAAATGGGT ACATAAGATTGTTTCTCGATTCAGGATANGCATGCAAGCAAACTCACCCGTEST: gi|60397359|gb|DN230175.1|DN230175
genomic: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGGTgtatcctttt ... tcttgcacagACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGT
EST: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGGT ACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGTEST: gi|21331882|gb|BQ487263.1|BQ487263
genomic: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGGTgtatcctttt ... tcttgcacagACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGT
EST: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGGT ACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGTEST: gi|7135572|gb|AW498154.1|AW498154
genomic: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGGTgtatcctttt ... tcttgcacagACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGT
EST: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAAT-GG- ACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGTEST: gi|211211598|gb|FL477381.1|FL477381
genomic: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGGTgtatcctttt ... tcttgcacagACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGT
EST: TTGCACCCTCTTGCCACCGGGAAGAACTACCTCAAGACTCCTAAATGGGT ACATAAGATTGTTTCTCGATTCAGGATAGGCATGCAAGCAAACTCACCCGTEST: gi|211211597|gb|FL477380.1|FL477380
genomic: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGGTgtatcctttt ... tcttgcacagACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGT
EST: TTGCACCCTCTTGCCACCGGGAAGAACTACCTCAAGACTCCTAAATGGGT ACATAAGATTGTTTCTCGATTCAGGATAGGCATGCAAGCAAACTCACCCGTEST: gi|40336279|gb|CK370349.1|CK370349
genomic: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGGTgtatcctttt ... tcttgcacagACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGT
EST: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGGT ACATAAGATTGTTGCTCGATTCAAGATAGGCATGCAAGCGAACTCACCCGTEST: gi|71767312|gb|DR965249.1|DR965249
genomic: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGGTgtatcctttt ... tcttgcacagACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGT
EST: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGGT ACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGTEST: gi|60349033|gb|DN216006.1|DN216006
genomic: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGGTgtatcctttt ... tcttgcacagACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGT
EST: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGGT ACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGTEST: gi|211191572|gb|FL254972.1|FL254972
genomic: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGGTgtatcctttt ... tcttgcacagACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGT
EST: TACCTCAAGACTCCTAAATGGGNTT ACATAAGATTGTTTCTCGATTCAGGGATAGGCATGCEST: gi|211191572|gb|FL254972.1|FL254972
genomic: TACCTCAAGACTCCTAAATGGG-T-gtatcctttt ... tcttgcacagACATAAGATTGTTGCTCGATTCAGG-ATAGGCATGC
EST: TACCTCAAGACTCCTAAATGGGNTT ACATAAGATTGTTTCTCGATTCAGGGATAGGCATGCEST: gi|67029845|gb|CO458594.1|CO458594
genomic: TACCTCAAGACTCCTAAATGGG-T-gtatcctttt ... tcttgcacagACATAAGATTGTTGCTCGATTCAGG-ATAGGCATGC
EST: TTGCACCCTCTTGCCACCGGGAAGAACTACCTCAAGACTCCTANATGGGT ACATAAGATTGTTTCTCGATTCAGGATAGGCATGCAAGCAAACTCACCCGTEST: gi|67018558|gb|CO447307.1|CO447307
genomic: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGGTgtatcctttt ... tcttgcacagACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGT
EST: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTNCTAAATGGGT ACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGTEST: gi|211211596|gb|FL477379.1|FL477379
genomic: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGGTgtatcctttt ... tcttgcacagACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGT
EST: AAGAACTACCTCAAGACTCCTAAATGGGT ACATAAGATTGTTTCTCGATTCAGGATAGGCATGCAAGCAAACTCACCCGTEST: gi|71438420|gb|DR819470.1|DR819470
genomic: AAGAGCTACCTCAAGACTCCTAAATGGGTgtatcctttt ... tcttgcacagACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGT
EST: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGGT ACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGTEST: gi|211342720|gb|FL460317.1|FL460317
genomic: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGGTgtatcctttt ... tcttgcacagACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGT
EST: TTGCACCCTCTTGCCACCGGGAAGAACTACCTCAAGACTCCTAAATGGGT ACATAAGATTGTTTCTCGATTCAGGATAGGCATGCAAGCAAACTCACCCGTEST: gi|71767311|gb|DR965248.1|DR965248
genomic: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGGTgtatcctttt ... tcttgcacagACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGT
EST: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGGT ACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGTEST: gi|211342721|gb|FL460318.1|FL460318
genomic: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGGTgtatcctttt ... tcttgcacagACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGT
EST: TTGCACCCTCTTGCCACCGGGAAGAACTACCTCAAGACTCCTAAATGGGT ACATAAGATTGTTTCTCGATTCAGGATAGGCATGCAAGCAAACTCACCCGTEST: gi|211191573|gb|FL254973.1|FL254973
genomic: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGGTgtatcctttt ... tcttgcacagACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGT
EST: TTGCACCCTCTTGCCACCGGGAAGAACTACCTCAAGACTCCTAAATGGGT ACATAAGATTGTTTCTCGATTCAGGATAGGCATGCAAGCAAACTCACCCGTEST: gi|7135238|gb|AW497985.1|AW497985
genomic: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGGTgtatcctttt ... tcttgcacagACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGT
EST: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAAT-GG- ACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGTEST: gi|67030179|gb|CO458928.1|CO458928
genomic: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGGTgtatcctttt ... tcttgcacagACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGT
EST: TTGCACCCTCTTGCCACCGGGAAGAACTACCTCAAGACTCCTAAATGGGT ACATAAGATTGTTTCTCGATTCAGGATAGGCATGCAAGCAAACTCACCCGTEST: gi|16927150|gb|BM080219.1|BM080219
genomic: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGGTgtatcctttt ... tcttgcacagACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGT
EST: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGGT ACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGTEST: gi|166531613|gb|EG309021.1|EG309021
genomic: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGGTgtatcctttt ... tcttgcacagACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGT
EST: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGG-T ACATAAGATTGTTGCEST: gi|21389975|gb|BQ528024.1|BQ528024
genomic: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGGTgtatcctttt ... tcttgcacagACATAAGATTGTTGC
EST: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGGT ACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGTEST: gi|37392930|gb|CF633718.1|CF633718
genomic: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGGTgtatcctttt ... tcttgcacagACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGT
EST: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGGT ACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGT
genomic: TTGCACCCTCTTGCCACCGGGAAGAGCTACCTCAAGACTCCTAAATGGGTgtatcctttt ... tcttgcacagACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGT
ttagttttgaatatctctgcaccttgtctccttaacctgctgcactcttgcacagACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGTCCGTCCACCAGCCAATGGCAACAGCGGGTCTGGTGTGTTTAGAGGAAGA
ctccttaac putative branch site
cactctt putative PPT
tttgaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatccttttacatggtcatggtcaaaacattctctcgcagttttcatatacaacgactaagatcaatttctgcaaatattttagttttgaatatctctgcaccttgtctccttaacctgctgcactcttgcacagACATAAGATTGTTGCTCGATTCAGGATAGGCATGCAAGCGAACTCACCCGTCCGTCCACCAGCCAATGGCAACAGCGGGTCTGGTGTGTTTAGAGGAAGA
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