1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...agttgctcaacattgcagcaagcaattcttggcatttcccttgccagaacttcattgttttaaggtgttttctcaatgttgataattctcatacttgcagATGGACGATGCACTGACAACTGGAAGCATCAAGACATCAGATGCAGAAAAGAGGCGTTTAGCAAAAGCTTCCCTTGTCTACAATTGTGAGAG
species | Zea mays |
transcript | GRMZM2G116919_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGCATTCTCACTGGGGTTCTGTCCTTCAGG ATGGACGATGCACTGACAACTGGAAGCATCAAGACATCAGATGCAGAAAAGEST: gi|74232849|gb|DT640763.1|DT640763
genomic: AGCATTCTCACTGGGCTTCTGTCCTTCATGgtaagttgtt ... atacttgcagATGGACGATGCACTGACAACTGGAAGCATCAAGACATCAGATGCAGAAAAG
EST: CATGTAAAACTTTATGCTGCAGCATTCTCACTGGGCTTCTGTCCTTCATG ATGGACGATGCACTGACAACTGGAAGCATCAAGACATCAGATGCAGAAAAG
genomic: CATGTAAAACTTTATGCTGCAGCATTCTCACTGGGCTTCTGTCCTTCATGgtaagttgtt ... atacttgcagATGGACGATGCACTGACAACTGGAAGCATCAAGACATCAGATGCAGAAAAG
agaacttcattgttttaaggtgttttctcaatgttgataattctcatacttgcagATGGACGATGCACTGACAACTGGAAGCATCAAGACATCAGATGCAGAAAAGAGGCGTTTAGCAAAAGCTTCCCTTGTCTACAATTGTGAGAG
tgttgat putative branch site (score: 355)
ttctcat putative PPT
attgttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttgctcaacattgcagcaagcaattcttggcatttcccttgccagaacttcattgttttaaggtgttttctcaatgttgataattctcatacttgcagATGGACGATGCACTGACAACTGGAAGCATCAAGACATCAGATGCAGAAAAGAGGCGTTTAGCAAAAGCTTCCCTTGTCTACAATTGTGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
-gttgctc
- - - - - cattgca
- - - - - - - - -gcaagca
- - - - - - - - - - - - attcttg
- - - - - - - - - - - - - - - - - - - ccttgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgat