1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttcggctgaatttgatacagatttgcctcatgctttaacattgagataccagtaattcacttacaacctgcttatccatgctctgtcatgattcatgtagGGTTACCACGGCCAACCTCTGCCACAAGGATTACTGGACGCACTAGACTCGGAAGACAGCTTCGTCTTCGAGGAAGAGGTCGTGAAGCTAATGGAGACCA
species | Zea mays |
transcript | GRMZM2G116785_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TAGGAGCTCCAGGAGCAGTTCTTCCCCTTCTCACAGAATCTAAGACTGAG GGTTACCACGGCCAACCTCTGCCACAAGGATTACTGGACGCACTAGACTCGEST: gi|78026119|gb|DV494506.1|DV494506
genomic: TAGGAGCTCCAGGAGCAGTTCTTCCCCTTCTCACAGAATCTAAGACTGAGgtgccaaacc ... attcatgtagGGTTACCACGGCCAACCTCTGCCACAAGGATTACTGGACGCACTAGACTCG
EST: TAGGAGCTCCAGGAGCAGTTCTTCCCCTTCTCACAGAATCTAAGACTGAG GGTTACCACGGCCAACCTCTGCCACAAGGATTACTGGACGCACTAGACTCGEST: gi|71299175|gb|DR785590.1|DR785590
genomic: TAGGAGCTCCAGGAGCAGTTCTTCCCCTTCTCACAGAATCTAAGACTGAGgtgccaaacc ... attcatgtagGGTTACCACGGCCAACCTCTGCCACAAGGATTACTGGACGCACTAGACTCG
EST: TAGGAGCTCCAGGAGCAGTTCTTCCCCTTCTCACAGAATCTAAGACTGAG GGTTACCACGGCCAACCTCTGCCACAAGGATTACTGGACGCACTAGACTCGEST: gi|4887525|gb|AI677624.1|AI677624
genomic: TAGGAGCTCCAGGAGCAGTTCTTCCCCTTCTCACAGAATCTAAGACTGAGgtgccaaacc ... attcatgtagGGTTACCACGGCCAACCTCTGCCACAAGGATTACTGGACGCACTAGACTCG
EST: TAGGAGCTCCAGGAGCAGTTCTTCCCCTTCTCACAGAATCTAAGACTGAG GGTTACCCCGGCCAACCTCTGCCACAAGGATTACTGGACGCACTAGACTCG
genomic: TAGGAGCTCCAGGAGCAGTTCTTCCCCTTCTCACAGAATCTAAGACTGAGgtgccaaacc ... attcatgtagGGTTACCACGGCCAACCTCTGCCACAAGGATTACTGGACGCACTAGACTCG
ataccagtaattcacttacaacctgcttatccatgctctgtcatgattcatgtagGGTTACCACGGCCAACCTCTGCCACAAGGATTACTGGACGCACTAGACTCGGAAGACAGCTTCGTCTTCGAGGAAGAGGTCGTGAAGCTAATGGAGACCA
cacttac putative branch site (score: 2)
agtaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcggctgaatttgatacagatttgcctcatgctttaacattgagataccagtaattcacttacaacctgcttatccatgctctgtcatgattcatgtagGGTTACCACGGCCAACCTCTGCCACAAGGATTACTGGACGCACTAGACTCGGAAGACAGCTTCGTCTTCGAGGAAGAGGTCGTGAAGCTAATGGAGACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
-tcggctg
- - - - - - - - - - - - - - catgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tccatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtcatg