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...tagagttgggtagccttttattaacatctattataggaactgctatttatgatacgatgacgaaaaaaattgaatttattttccccttgtctgtttgcagCTCACCCTTGGTTACGAGATGAACAAAGGCAAATTCCATTGGACATACTCATTTTCAGATTAGTTAAGCAGTATCTCCGTGCTACTCCTCTTAAACGTTT
species | Zea mays |
transcript | GRMZM2G115518_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATTTCTGAACAAAGATTACCGCAAAAGAATGACTGCTGTCCAAGCACTGA CTCACCCTTGGTTACGAGATGAACAAAGGCAAATTCCATTGGACATACTCAEST: gi|76284391|gb|DV023959.1|DV023959
genomic: ATTTCTGAACAAAGATTACCGCAAAAGAATGACTGCTGTCCAAGCACTGAgtaagtcatc ... ctgtttgcagCTCACCCTTGGTTACGAGATGAACAAAGGCAAATTCCATTGGACATACTCA
EST: CCAAGCACTGA CTCACCCTTGGTTACGAGATGAACAAAGGCAAATTCCATTGGACATACTCAEST: gi|32823279|gb|CD963001.1|CD963001
genomic: CCAAGCACTGAgtaagtcatc ... ctgtttgcagCTCACCCTTGGTTACGAGATGAACAAAGGCAAATTCCATTGGACATACTCA
EST: ATTTCTGAACAAAGATTACCGCAAAAGAATGACTGCTGTCCAAGCACTGA CTCACCCTTGGTTACGAGATGAACAAAGGCAAATTCCATTGGACATACTCAEST: gi|76284392|gb|DV023960.1|DV023960
genomic: ATTTCTGAACAAAGATTACCGCAAAAGAATGACTGCTGTCCAAGCACTGAgtaagtcatc ... ctgtttgcagCTCACCCTTGGTTACGAGATGAACAAAGGCAAATTCCATTGGACATACTCA
EST: ATTTCTGAACAAAGATTACCGCAAAAGAATGACTGCTGTCCAAGCACTGA CTCACCCTTGGTTACGAGATGAACAAAGGCAAATTCCATTGGACATACTCAEST: gi|211371493|gb|FL287192.1|FL287192
genomic: ATTTCTGAACAAAGATTACCGCAAAAGAATGACTGCTGTCCAAGCACTGAgtaagtcatc ... ctgtttgcagCTCACCCTTGGTTACGAGATGAACAAAGGCAAATTCCATTGGACATACTCA
EST: ATTTCTGAACAAAGATTACCGCAAAAGAATGACTGCTGTCCAAGCACTGA CTCACCCTTGGTTACGAGATGAACAAAGGCAAATTCCATTGGACATACTCAEST: gi|6626368|gb|AW257900.1|AW257900
genomic: ATTTCTGAACAAAGATTACCGCAAAAGAATGACTGCTGTCCAAGCACTGAgtaagtcatc ... ctgtttgcagCTCACCCTTGGTTACGAGATGAACAAAGGCAAATTCCATTGGACATACTCA
EST: ATTTCTGAACAAAGATTACCGCAAAAGAATGACTGCTGTCCAAGCACTGA CTCACCCTTGGTTACGAGATGAACAAAGGCAAATTCCATTGGACATACTCA
genomic: ATTTCTGAACAAAGATTACCGCAAAAGAATGACTGCTGTCCAAGCACTGAgtaagtcatc ... ctgtttgcagCTCACCCTTGGTTACGAGATGAACAAAGGCAAATTCCATTGGACATACTCA
tttatgatacgatgacgaaaaaaattgaatttattttccccttgtctgtttgcagCTCACCCTTGGTTACGAGATGAACAAAGGCAAATTCCATTGGACATACTCATTTTCAGATTAGTTAAGCAGTATCTCCGTGCTACTCCTCTTAAACGTTT
tttattttccccttgt CT-rich tract
acgaaaaaaattgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagagttgggtagccttttattaacatctattataggaactgctatttatgatacgatgacgaaaaaaattgaatttattttccccttgtctgtttgcagCTCACCCTTGGTTACGAGATGAACAAAGGCAAATTCCATTGGACATACTCATTTTCAGATTAGTTAAGCAGTATCTCCGTGCTACTCCTCTTAAACGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC