1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttagtactctatttctgtgctcgtattaccaatttaatgtggacctgtgttaggtcttcatctaattccttgccgcttgctcctgtcttctccatatgcagTACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTCGTCATGAATCCACAGAACGGTCTCGTGATCAAGCCATTCAGGAAAGCGC
species | Zea mays |
transcript | GRMZM2G114172_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAG TACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTCEST: gi|37401670|gb|CF638203.1|CF638203
genomic: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAGgttagtactc ... ccatatgcagTACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTC
EST: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAG TACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTCEST: gi|78180520|gb|DV551013.1|DV551013
genomic: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAGgttagtactc ... ccatatgcagTACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTC
EST: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAG TACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTCEST: gi|5791422|gb|AI978214.1|AI978214
genomic: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAGgttagtactc ... ccatatgcagTACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTC
EST: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAG TACTACAACGAAAAGAACACCATAATGTTTGATGACCTAAGAAGGAATTTCEST: gi|78090560|gb|DV518934.1|DV518934
genomic: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAGgttagtactc ... ccatatgcagTACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTC
EST: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAG TACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTCEST: gi|8551534|gb|BE128880.1|BE128880
genomic: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAGgttagtactc ... ccatatgcagTACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTC
EST: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAG TACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTCEST: gi|78113537|gb|DV531928.1|DV531928
genomic: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAGgttagtactc ... ccatatgcagTACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTC
EST: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAG TACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTCEST: gi|211170844|gb|FL475252.1|FL475252
genomic: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAGgttagtactc ... ccatatgcagTACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTC
EST: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAG TACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTCEST: gi|76021043|gb|DT948213.1|DT948213
genomic: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAGgttagtactc ... ccatatgcagTACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTC
EST: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAG TACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTCEST: gi|37383817|gb|CF628944.1|CF628944
genomic: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAGgttagtactc ... ccatatgcagTACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTC
EST: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAG TACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTCEST: gi|148958196|gb|EC904401.2|EC904401
genomic: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAGgttagtactc ... ccatatgcagTACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTC
EST: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAG TACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTCEST: gi|78543692|gb|DV621190.1|DV621190
genomic: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAGgttagtactc ... ccatatgcagTACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTC
EST: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAG TACTACAACGAAAAGAACACCATAATGTTTGATGACCTAAGAAGGAATTTCEST: gi|9743097|gb|BE519245.1|BE519245
genomic: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAGgttagtactc ... ccatatgcagTACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTC
EST: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAG TACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTCEST: gi|110957655|gb|EE177707.1|EE177707
genomic: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAGgttagtactc ... ccatatgcagTACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTC
EST: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAG TACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTCEST: gi|20337038|gb|BQ172668.1|BQ172668
genomic: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAGgttagtactc ... ccatatgcagTACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTC
EST: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAG TACTACAACGAAAAGAACACCATAATGTTTGATGACCTAAGAAGGAATTTCEST: gi|78106134|gb|DV524552.1|DV524552
genomic: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAGgttagtactc ... ccatatgcagTACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTC
EST: GACTTTTGACTGGCA-GCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAG TACTACAACGAAAAGA-CACCATAATGTTTGATGATCTAAGAAGGAATTTCEST: gi|60351760|gb|DN218733.1|DN218733
genomic: GACTTTTGACTG-CAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAGgttagtactc ... ccatatgcagTACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTC
EST: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAG TACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTCEST: gi|78103926|gb|DV522344.1|DV522344
genomic: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAGgttagtactc ... ccatatgcagTACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTC
EST: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAG TACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTCEST: gi|37377229|gb|CF625199.1|CF625199
genomic: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAGgttagtactc ... ccatatgcagTACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTC
EST: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAG TACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTCEST: gi|71772417|gb|DR970350.1|DR970350
genomic: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAGgttagtactc ... ccatatgcagTACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTC
EST: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAG TACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAAGAATTTEST: gi|12058284|gb|BF733104.1|BF733104
genomic: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAGgttagtactc ... ccatatgcagTACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTT
EST: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAG TACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTCEST: gi|86470825|gb|DY237195.1|DY237195
genomic: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAGgttagtactc ... ccatatgcagTACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTC
EST: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAG TACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTCEST: gi|149088593|gb|EE177708.2|EE177708
genomic: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAGgttagtactc ... ccatatgcagTACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTC
EST: AGACTTTTGACTGCAAGCCTCTTGGTGTCTTTTGGGCTCAGTTCCCTGAG TACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAGGGAATTTCEST: gi|37401175|gb|CF637951.1|CF637951
genomic: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAGgttagtactc ... ccatatgcagTACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTC
EST: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAG TACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTCEST: gi|78090561|gb|DV518935.1|DV518935
genomic: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAGgttagtactc ... ccatatgcagTACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTC
EST: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAG TACTACANCGAAAAAGA-CACCATAATGTTTGATGATEST: gi|101394401|gb|EB819135.1|EB819135
genomic: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAGgttagtactc ... ccatatgcagTACTACAACGAAAA-GAACACCATAATGTTTGATGAT
EST: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAG TACTACAACGAAAAGAACACCATAATGTTTGATGATTTAAGAAGGAATTTC
genomic: AGACTTTTGACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAGgttagtactc ... ccatatgcagTACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTC
gtgttaggtcttcatctaattccttgccgcttgctcctgtcttctccatatgcagTACTACAACGAAAAGAACACCATAATGTTTGATGATCTAAGAAGGAATTTCGTCATGAATCCACAGAACGGTCTCGTGATCAAGCCATTCAGGAAAGCGC
atctaat putative branch site (score: 3)
ttccttgccgcttgct CT-rich tract
atctaatt TA-rich tract