1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...agtccttttgtttaaaatgctgaggcatgtttacttcatattaagcaataatgagatgagaaaatacttctaccaaactctgggggccccttgtttccagGTTTTGGAGTATGTCGCATCACTCCTTGAAATGACAGAGTCAGAATTGGCGGAGTTGAGTTACAAGAATGCTACCAAGCTGTTTTCTTATCCTGGCTCCA
species | Zea mays |
transcript | GRMZM2G114131_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGCTAATGCATCAAATGAGTCCTTGAACCATCCAGAAAATATCCATATT GTTTTGGAGTATGTCGCATCACTCCTTGAAATGCCAGAGTCAGAATTGGCGEST: gi|60336790|gb|DN203763.1|DN203763
genomic: CTGCTAATGCATCAAATGAGTCCTTGAACCATCCAGAAAATATCCATATTgtaagttttt ... ttgtttccagGTTTTGGAGTATGTCGCATCACTCCTTGAAATGACAGAGTCAGAATTGGCG
EST: CTGCTAATGCATCAAATGAGTCCTTGAACCATCCAGAAAATATCCATATT GTTTTGGAGTATGTTGCATCACTCCTTGAAATGCCAGAGTCAGAATTGGCGEST: gi|50331795|gb|CO526921.1|CO526921
genomic: CTGCTAATGCATCAAATGAGTCCTTGAACCATCCAGAAAATATCCATATTgtaagttttt ... ttgtttccagGTTTTGGAGTATGTCGCATCACTCCTTGAAATGACAGAGTCAGAATTGGCG
EST: CTGCTAATGCATCAAATGAGTCCTTGAACCATCCAGAAAATATCCATATT GTTTTGGAGTATGTCGCATCACTCCTTGAAATGACAGAGTCAGAATTGGCG
genomic: CTGCTAATGCATCAAATGAGTCCTTGAACCATCCAGAAAATATCCATATTgtaagttttt ... ttgtttccagGTTTTGGAGTATGTCGCATCACTCCTTGAAATGACAGAGTCAGAATTGGCG
caataatgagatgagaaaatacttctaccaaactctgggggccccttgtttccagGTTTTGGAGTATGTCGCATCACTCCTTGAAATGACAGAGTCAGAATTGGCGGAGTTGAGTTACAAGAATGCTACCAAGCTGTTTTCTTATCCTGGCTCCA
ccccttgtttcc CT-rich tract
aaaatactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtccttttgtttaaaatgctgaggcatgtttacttcatattaagcaataatgagatgagaaaatacttctaccaaactctgggggccccttgtttccagGTTTTGGAGTATGTCGCATCACTCCTTGAAATGACAGAGTCAGAATTGGCGGAGTTGAGTTACAAGAATGCTACCAAGCTGTTTTCTTATCCTGGCTCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - -ttttgtt
- - - - - - - -aatgctg
- - - - - - - - - - - aggcatg
- - - - - - - - - - - - - - - - - ttcatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaaaata