1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...cgtcttcgtattcaattaagaacatcaagaagagaacattctaaaataaatatcattggttgaattgctgacattctttgtacaatatctttcccaccagGTATCAAATATCAACTTTGGCAACAAAGCTTGGTGTCAGAAATATTGCATTCCTTGGATCTGGTTTATTATTAGCAAACTATATTGCTGCTATTGCTGTA
species | Zea mays |
transcript | GRMZM2G113476_T03 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGGTCATTGCTATAACCAAAGATCTCCCTGATGTTGAAGGAGATCGCAA GTATCAAATATCAACTTTGGCAACAAAGCTTGGTGTCAGAAATATTGCATT
genomic: TTGGTCATTGCTATAACCAAAGATCTCCCTGATGTTGAAGGAGATCGCAAgtgagtttgt ... ttcccaccagGTATCAAATATCAACTTTGGCAACAAAGCTTGGTGTCAGAAATATTGCATT
ataaatatcattggttgaattgctgacattctttgtacaatatctttcccaccagGTATCAAATATCAACTTTGGCAACAAAGCTTGGTGTCAGAAATATTGCATTCCTTGGATCTGGTTTATTATTAGCAAACTATATTGCTGCTATTGCTGTA
tgctgac putative branch site (score: 41)
tctttcccacc putative PPT
aatatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgtcttcgtattcaattaagaacatcaagaagagaacattctaaaataaatatcattggttgaattgctgacattctttgtacaatatctttcccaccagGTATCAAATATCAACTTTGGCAACAAAGCTTGGTGTCAGAAATATTGCATTCCTTGGATCTGGTTTATTATTAGCAAACTATATTGCTGCTATTGCTGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - aacatca
- - - - - - - - - - - - - - gaagagaa
- - - - - - - - - - - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ttggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attgctg