Sequence
atgc intronic sequence ATGC exonic sequence...tattatttatcatgttttacaatagcaaatatctaactgaaacagccatgaaagcatttataattataagtgttgacatgaatctttgtatcaatttcagTGATTATGTTTCTGATCTCCTGGTCTTTCACTGTTGTCTCCCTTGCCCTTGCAAGCCTCATCTATTACTATGTGAGCATAAAAGGGAAGGCTGGAGACTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G113276_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os08g23440.1 (Oryza sativa), 3'ss of exon 12
tattatttatcatgttttacaatagcaaatatctaactgaaacagccatgaaagcatttataattataagt---gttgacatgaatctttgtatcaatt--tcagTGATTATGTTTCTGATCTCCTGGTCTTTCACTGTTGTCTCCCTTGCCCTTGCAAGCCTCATCTATTACTATGTGAGCATAAAAGGGAAGGCTGGAGACTG
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--ttgtttaacttgtactttcgca-caaatattttaatgcaaccttatttt--gtctttataatactgctttccacttacttggatcgttctctcaatttttcagTGATCATGTTTTTGATATCCTGGTCTTTTACTGTTGTCTCCCTTGCCCTTGCAAGCCTCATCTATTACTATGTGAGCTTAAAAGGTAAGGCTGGAGACTG
upper sequence: GRMZM2G113276_T01 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA15G22520.1 (Glycine max), 3'ss of exon 10
tattatttatcatgttttacaa--tagcaaatatctaactgaaacagccatgaaagcatttataattataagtgttgacatgaatctttgtatcaatttcagTGATTATGTTTCTGATCTCCTGGTCTTTCACTGTTGTCTCCCTTGCCCTTGCAAGCCTCATCTATTACTATGTGAGCATAAAAGGGAAGGCTGGAGACTG
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catagtttgctattattcattaggtgcttaccactgtggtactgctgctgtgtgagtgtt-acattgaaacttgattctgtggtgatccttacctatg-cagTGATCATGTTCCTAATCTCTTGGTCATTCACCGTGGTGTCTTTGCTCCTTGCAAGCCTCATATATAAGTACGTGAGCATTAAAGGAAAGGCTGGGGACTG
upper sequence: GRMZM2G113276_T01 (Zea mays), 3'ss of exon 6
lower sequence: Vv10s0003g04530.t01 (Vitis vinifera), 3'ss of exon 11
tattatttatcatgttt-tacaatagcaaatatctaac-tgaaacagccatgaaagcatttataattataagtgttgacatgaatctttgtatcaatttcagTGATTATGTTTCTGATCTCCTGGTCTTTCACTGTTGTCTCCCTTGCCCTTGCAAGCCTCATCTATTACTATGTGAGCATAAAAGGGAAGGCTGGAGACTG
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--tggatggtcgtgtacgtgcatgtgcatgtgtgtattactccacatgcatgtatttttttttaggatcatatttaacagctgcttcttgtgttttgtgcagTGATCATGTTCTTGATATCTTGGTCATTTACTGTGGTGTCCCTAGCCCTTGCAAGTCTCATATATTATTATGTATGCATCAAAGGGAAGGCTGGGGACTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ccatgaaagcatttataattataagtgttgacatgaatctttgtatcaatttcagTGATTATGTTTCTGATCTCCTGGTCTTTCACTGTTGTCTCCCTTGCCCTTGCAAGCCTCATCTATTACTATGTGAGCATAAAAGGGAAGGCTGGAGACTG
tgttgac putative branch site (score: 3)
aaagcatttataatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tattatttatcatgttttacaatagcaaatatctaactgaaacagccatgaaagcatttataattataagtgttgacatgaatctttgtatcaatttcagTGATTATGTTTCTGATCTCCTGGTCTTTCACTGTTGTCTCCCTTGCCCTTGCAAGCCTCATCTATTACTATGTGAGCATAAAAGGGAAGGCTGGAGACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA