1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ctgcgttttgttgagaaaggctaaactgcagtgcctctatgttttttgctggattgtatcatcctatggtgtcattaacattgaagccttgccgttgcagGTTGGGCAGGAATTTGTCTTTGAAAGCAGTTTCAGCACCTTTTCGCTGTGCAATCTGCCAAGTGGACCAAGAGCCCTTCGAAGATTTGATGAGAGATAAT
species | Zea mays |
transcript | GRMZM2G113016_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGTTCTGTGGAGGAGTTATTTGAAGAAGGCTCTGCAATGTTAGAAGAAAG GTTGGGCAGGAATTTGTCTTTGAAAGCAGTTTCAGCACCTTTTCGCTGTGCEST: gi|110532386|gb|EE036570.1|EE036570
genomic: GGTTCTGTGGAGGAGTTATTTGAAGAAGGCTCTGCAATGTTAGAAGAAAGgtatgcctgc ... gccgttgcagGTTGGGCAGGAATTTGTCTTTGAAAGCAGTTTCAGCACCTTTTCGCTGTGC
EST: GGTTCTGTGGAGGAGTTATTTGAAGAAGGCTCTGCAATGTTAGAAGAAAG GTTGGGCAGGAATTTGTCTTTGAAAGCAGTTTCAGCACCTTTTCGCTGTGCEST: gi|91049082|gb|EB159500.1|EB159500
genomic: GGTTCTGTGGAGGAGTTATTTGAAGAAGGCTCTGCAATGTTAGAAGAAAGgtatgcctgc ... gccgttgcagGTTGGGCAGGAATTTGTCTTTGAAAGCAGTTTCAGCACCTTTTCGCTGTGC
EST: GGTTTTGTGGAGGAGTTATTTGAAGAAGGCTCTGCAATGTTAGAAGAAAG GTTGGGCAGGAATTTGTCTTTGAAAGCAGTTTCAGCACCTTTTCGCTGTGCEST: gi|101394211|gb|EB819040.1|EB819040
genomic: GGTTCTGTGGAGGAGTTATTTGAAGAAGGCTCTGCAATGTTAGAAGAAAGgtatgcctgc ... gccgttgcagGTTGGGCAGGAATTTGTCTTTGAAAGCAGTTTCAGCACCTTTTCGCTGTGC
EST: GTTCTGTGGGAGGAGTTATTTGAAGAAGGCTCTGCAATGTTAGAAGAAAG GTTGGGCAGGAATTTGTCTTTGAAAGCAGTTTCAGCACCTTTTCGCTGTGCEST: gi|211123564|gb|FL444970.1|FL444970
genomic: GTTCTGT-GGAGGAGTTATTTGAAGAAGGCTCTGCAATGTTAGAAGAAAGgtatgcctgc ... gccgttgcagGTTGGGCAGGAATTTGTCTTTGAAAGCAGTTTCAGCACCTTTTCGCTGTGC
EST: GGTTCTGTGGAGGAGTTATTTGAAGAAGGCTCTGCAATGTTAGAAGAAAG GTTGGGCAGGAATTTGTCTTTGAAAGCAGTTTCAGCACCTTTTCGCTGTGCEST: gi|50336766|gb|CO531892.1|CO531892
genomic: GGTTCTGTGGAGGAGTTATTTGAAGAAGGCTCTGCAATGTTAGAAGAAAGgtatgcctgc ... gccgttgcagGTTGGGCAGGAATTTGTCTTTGAAAGCAGTTTCAGCACCTTTTCGCTGTGC
EST: GGTTCTGTGGAGGAGTTATTTGAAGAAGGCTCTGCAATGTTAGAAGAAAG GTTGGGCAGGAATTTGTCTTTGAAAGCAGTTTCAGCACCTTTTCGCTGTGC
genomic: GGTTCTGTGGAGGAGTTATTTGAAGAAGGCTCTGCAATGTTAGAAGAAAGgtatgcctgc ... gccgttgcagGTTGGGCAGGAATTTGTCTTTGAAAGCAGTTTCAGCACCTTTTCGCTGTGC
ttgctggattgtatcatcctatggtgtcattaacattgaagccttgccgttgcagGTTGGGCAGGAATTTGTCTTTGAAAGCAGTTTCAGCACCTTTTCGCTGTGCAATCTGCCAAGTGGACCAAGAGCCCTTCGAAGATTTGATGAGAGATAAT
cattaac putative branch site (score: 2)
ccttgcc putative PPT
attaacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgcgttttgttgagaaaggctaaactgcagtgcctctatgttttttgctggattgtatcatcctatggtgtcattaacattgaagccttgccgttgcagGTTGGGCAGGAATTTGTCTTTGAAAGCAGTTTCAGCACCTTTTCGCTGTGCAATCTGCCAAGTGGACCAAGAGCCCTTCGAAGATTTGATGAGAGATAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA