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...tgcccttctaaacccttacagaattagaagtgtatgatacaattttccccctttggaatgtctccgtgtctgttgacattgtttaatctacttgattcagGTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGAAAATTCTGACAGAGAGGATGCATTCT
species | Zea mays |
transcript | GRMZM2G111713_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCAAGCATTAAAAATAT-CAAGGAG GTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGAAAATTCTGEST: gi|89248722|gb|DY620508.1|DY620508
genomic: TCAAGCATTAAAAATATACAAGGAGgtgcgtctta ... cttgattcagGTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGAAAATTCTG
EST: ATTAAAAATATACAAGGAG GTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGAAAATTCTGEST: gi|71420007|gb|DR804974.1|DR804974
genomic: ATTAAAAATATACAAGGAGgtgcgtctta ... cttgattcagGTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGAAAATTCTG
EST: CAAAAATCAATTCTACGATCAAGCATTAAAAATATACAAGGAG GTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGAAAATTCTGEST: gi|211237149|gb|FL440871.1|FL440871
genomic: CAAAAATCAATTCTACGATCAAGCATTAAAAATATACAAGGAGgtgcgtctta ... cttgattcagGTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGAAAATTCTG
EST: GGTATACCAAAAATCAATTCTACGATCAAGCATTAAAAATATACAAGGAG GTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGAAAATTCTGEST: gi|166679809|gb|EG146008.1|EG146008
genomic: GGTATACCAAAAATCAATTCTACGATCAAGCATTAAAAATATACAAGGAGgtgcgtctta ... cttgattcagGTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGAAAATTCTG
EST: GGTATACCAAAAATCAATTCTACGATCAAGCATTAAAAATATACAAGGAG GTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGAAAATTCTG
genomic: GGTATACCAAAAATCAATTCTACGATCAAGCATTAAAAATATACAAGGAGgtgcgtctta ... cttgattcagGTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGAAAATTCTG
tccccctttggaatgtctccgtgtctgttgacattgtttaatctacttgattcagGTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGAAAATTCTGACAGAGAGGATGCATTCT
tctactt CT-rich tract
attgtttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcccttctaaacccttacagaattagaagtgtatgatacaattttccccctttggaatgtctccgtgtctgttgacattgtttaatctacttgattcagGTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGAAAATTCTGACAGAGAGGATGCATTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
tgccctt
- - - - - - - - - - - - - - -gtgtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgttga