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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcacacctttattacgaagataaatatgacttattatgttctctgtatatctgcttaccgtgaggattcttgaaccatgaaccatttttcttttgtgtggggatcctaatagtttttattgaactgatactatttgtgttttctgtggcagGATGAGTATTCAAAAGAAGATGGTCTATCTTTGAGAAACCTTACCTTACTCTTCTGCTATTTGTGCATATTTGGTGTTACCTCAAG

Basic information

species Zea mays
transcript GRMZM2G111138_T03
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G111138_T03 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os05g05450.1 (Oryza sativa), 3'ss of exon 3
gtatcacacctt----tattacgaagataaatatgacttattatgttctctgtatatctgcttaccgtgaggattcttgaaccatgaaccatttttcttttgtgtggggatcctaatagtttttattgaactgatactatttgtgttttc----tgtggcagGATGAGTATTCAAAAGAAGATGGTCTATCTTTGAGAAACCTTACCTTACTCTTCTGCTATTTGTGCATATTTGGTGTTACCTCAAG
|||| ||   ||    |||||| ||||| |||   |  | || | |||| |    ||||| ||       |||| ||||    |||  |    |  || |       |  |  |  || ||||   | |  | |||   | | |  ||||    |||| ||||||||||| ||||||||||||||||||||| |||| || ||||| |||||  |||| |||||||||||||||| ||| |  |||||
gtatgactatttctactattacaaagatgaattgcaactgttgttttcttt---catctgtttt------ggatacttgggttatgttctgagtgactatcaca---gtttatttttatttttagataagttaatatgttgtcttctttcccattgtgacagGATGAGTACTCAAAAGAAGATGGTCTATCTCTGAGGAATCTTACTTTACTGCTCTGTTATTTGTGCATATTTGATGTCATTTCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtggggatcctaatagtttttattgaactgatactatttgtgttttctgtggcagGATGAGTATTCAAAAGAAGATGGTCTATCTTTGAGAAACCTTACCTTACTCTTCTGCTATTTGTGCATATTTGGTGTTACCTCAAG
                                        tgttttct  CT-rich tract
          taatagtttttattga  TA-rich tract