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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgataatattgatgcatgttatttttgtatactcctttatattaatgcagccatttagacaaaactaggtgaagttaatacatgctattcctggatgcagAGTTCTGGAAGCAAGTCCCTCCCAGTGAACCTTACCGTGTGATTCTGAGTGATGTCAGAGATAAACTCTATAACACACGTGAACGAGCACGTCACTTATT

Basic information

species Zea mays
transcript GRMZM2G110714_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G110714_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os01g55350.1 (Oryza sativa), 3'ss of exon 8
--tgataatattgatgcatgttatttttgtatactcctttatattaatgcagccatttagacaaaactaggtg-aagttaatacatgctattcctggatgcagAGTTCTGGAAGCAAGTCCCTCCCAGTGAACCTTACCGTGTGATTCTGAGTGATGTCAGAGATAAACTCTATAACACACGTGAACGAGCACGTCACTTATT
    |   ||    | | |||  ||||    | |   ||| ||  | ||       ||||    |   |  || | | | |||  ||||  || || |||||||||||||||| ||||| ||||| |||||||| || ||||| || |||||  |||||||||||||  | || || ||||| || |||||||| || |||||
ttccacgttagctttac-tgtgtttttccctttcctttttttacaactgtgatatattaggtggagtgaaatgcatgctgata--tgcttctcttgaatgcagAGTTCTGGAAACAAGTTCCTCCGAGTGAACCCTATCGTGTAATACTGAGCAATGTCAGAGATAAGTTGTACAATACACGCGAGCGAGCACGCCATTTATT

upper sequence: GRMZM2G110714_T01 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA13G36670.1 (Glycine max), 3'ss of exon 7
tgataatattgatgcatgttatttttgtatactcctttatattaatgcagccatttagacaaaactaggtgaagttaata-catgctattcctggatgcagAGTTCTGGAAGCAAGTCCCTCCCAGTGAACCTTACCGTGTGATTCTGAGTGATGTCAGAGATAAACTCTATAACACACGTGAACGAGCACGTCACTTATT
   ||||||| |        ||   ||   | |  |||| ||  ||        | | | | |  |   ||   |  ||| ||   | ||  | |  |||||||| ||||| || || ||||| | ||| || || ||||| |||||  |||||||| |||| ||||| ||||||||||| ||||| || || || |||||
-tttaatatttaaaacaaaaataactgctaaatattttagatatatttttattataaaaaatagttcactgttatcgataacaaattcttaattgcggcagAGTTTTGGAAACAGGTTCCTCCAAATGAGCCATATCGTGTTATTCTTGGTGATGTCCGAGACAAACTGTATAACACACGGGAACGTGCTCGCCAATTATT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcagccatttagacaaaactaggtgaagttaatacatgctattcctggatgcagAGTTCTGGAAGCAAGTCCCTCCCAGTGAACCTTACCGTGTGATTCTGAGTGATGTCAGAGATAAACTCTATAACACACGTGAACGAGCACGTCACTTATT
                           agttaat  putative branch site (score: 4)
                                       ctattcct  putative PPT
                          aagttaata  TA-rich tract