1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gatgttaggattaatatttctcaacacctgattctacttttatagaaatttggtgtgatacttttcagtaaagcaactaaatttagtttttttttggtagGCTCTTGATACTTTCAACACAGCAGTTGTATCACCGATATACTATACAATGTTCACGTCACTAACCATTTTGGCTAGCGTGATAATGTTCAAG
species | Zea mays |
transcript | GRMZM2G110398_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CCATTGTTGTTGTTGCATGTATAGTAACACAGATGAACTACCTGAACAAG GCTCTTGATACTTTCAACACAGCAGTTGTATCACCGATATACTATEST: gi|148966487|gb|EE017504.2|EE017504
genomic: CCATTGTTGTTGTTGCATGTATAGTAACACAGATGAACTACCTGAACAAGgtaatactga ... tttttggtagGCTCTTGATACTTTCAACACAGCAGTTGTATCACCGATATACTAT
EST: CCATTGTTGTTGTTGCATGTATAGTAACACAGATGAACTACCTGAACAAG GCTCTTGATACTTTCAACACAGCAGTTGTATCACCGATATACTATACAATGEST: gi|60342405|gb|DN209378.1|DN209378
genomic: CCATTGTTGTTGTTGCATGTATAGTAACACAGATGAACTACCTGAACAAGgtaatactga ... tttttggtagGCTCTTGATACTTTCAACACAGCAGTTGTATCACCGATATACTATACAATG
EST: GTAACACAGATGAACTACCTGAACAAG GCTCTTGATACTTTCAACACAGCAGTTGTATCACCGATATACTATACAATGEST: gi|71759889|gb|DR957826.1|DR957826
genomic: GTAACACAGATGAACTACCTGAACAAGgtaatactga ... tttttggtagGCTCTTGATACTTTCAACACAGCAGTTGTATCACCGATATACTATACAATG
EST: TAGTAACACAGATGAACTACCTGAACAAG GCTCTTGATACTTTCAACACAGCAGTTGTATCACCGATATACTATACAATGEST: gi|71442597|gb|DR823647.1|DR823647
genomic: TAGTAACACAGATGAACTACCTGAACAAGgtaatactga ... tttttggtagGCTCTTGATACTTTCAACACAGCAGTTGTATCACCGATATACTATACAATG
EST: CCATTGTTGTTGTTGCATGTATAGTAACACAGATGAACTACCTGAACAAG GCTCTTGATACTTTCAACACAGCAGTTGTATCACCGATATACTATACAATG
genomic: CCATTGTTGTTGTTGCATGTATAGTAACACAGATGAACTACCTGAACAAGgtaatactga ... tttttggtagGCTCTTGATACTTTCAACACAGCAGTTGTATCACCGATATACTATACAATG
aaatttggtgtgatacttttcagtaaagcaactaaatttagtttttttttggtagGCTCTTGATACTTTCAACACAGCAGTTGTATCACCGATATACTATACAATGTTCACGTCACTAACCATTTTGGCTAGCGTGATAATGTTCAAG
aactaaa putative branch site (score: 2)
tttagttttttttt CT-rich tract
taaagcaactaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatgttaggattaatatttctcaacacctgattctacttttatagaaatttggtgtgatacttttcagtaaagcaactaaatttagtttttttttggtagGCTCTTGATACTTTCAACACAGCAGTTGTATCACCGATATACTATACAATGTTCACGTCACTAACCATTTTGGCTAGCGTGATAATGTTCAAG
- - - - - - - - - - -caacacc
- - - - - - - - - - - - - - tgattct
- - - - - - - - - - - - - - - - - - - - - - - - - tggtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caactaa