1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgtgcaggacatttctttattttttatgtgtaaagagattacagttttttagttttgctgctcaatgggttttccagtcgtttaatctgcatttccaatgcagAAAACTGTTCTCGAGGCAGTGACTGCGATTCTCGGAGGTGGTCTACGTGTTGGTGTTCTTCACCATGGAAAGAAAGTTAGAGATGATAATAAAACGTTGA
species | Zea mays |
transcript | GRMZM2G110309_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGAACTTCTTGTTGAAATCCCAGAAAGTGCAACTGTTGGCTCACTAAAG AAAACTGTTCTCGAGGCAGTGACTGCGATTCTCGGAGGTGGTCTACGTGTTEST: gi|148942281|gb|EC887299.2|EC887299
genomic: CTGAACTTCTTGTTGAAATCCCAGAAAGTGCAACTGTTGGCTCACTAAAGgtatgtgcag ... tccaatgcagAAAACTGTTCTCGAGGCAGTGACTGCGATTCTCGGAGGTGGTCTACGTGTT
EST: CTGAACTTCTTGTTGAAATCCCAGAAAGTGCAACTGTTGGCTCACTAAAG AAAACTGTTCTCGAGGCAGTGACTGCGATTCTCGGAGGTGGTCTACGTGTT
genomic: CTGAACTTCTTGTTGAAATCCCAGAAAGTGCAACTGTTGGCTCACTAAAGgtatgtgcag ... tccaatgcagAAAACTGTTCTCGAGGCAGTGACTGCGATTCTCGGAGGTGGTCTACGTGTT
ttagttttgctgctcaatgggttttccagtcgtttaatctgcatttccaatgcagAAAACTGTTCTCGAGGCAGTGACTGCGATTCTCGGAGGTGGTCTACGTGTTGGTGTTCTTCACCATGGAAAGAAAGTTAGAGATGATAATAAAACGTTGA
gtttaat putative branch site (score: 194)
catttcc putative PPT
tttaatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgcaggacatttctttattttttatgtgtaaagagattacagttttttagttttgctgctcaatgggttttccagtcgtttaatctgcatttccaatgcagAAAACTGTTCTCGAGGCAGTGACTGCGATTCTCGGAGGTGGTCTACGTGTTGGTGTTCTTCACCATGGAAAGAAAGTTAGAGATGATAATAAAACGTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG