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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgattcaatgtcaacctgctaactatttactcaccgtttattttaacaggttagtggattatttattttctcctactttactgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCCTTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGA

Basic information

species Zea mays
transcript GRMZM2G109383_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G109383_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os03g50480.1 (Oryza sativa), 3'ss of exon 6
gtatgattcaatgtcaacctgctaactatttactcaccgtttattttaacaggttagtggattatttatttt-ctcctactttactgct------gcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCCTTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGA
||| || | | | || || || | ||| | |||| | | |||| || || | ||| | ||| ||||| || ||| |||||| |||||||||||||| |||||||| | |||||||||||| |||||||| |||||||| |||||||||||||||| | |||||||||||||||||||||
gtaagagttgacgctgacttgttagtt-tttgttgtttgttt-tgctcccagggtattgaaatatatgtttcactcctttattcttgcccacatcgcagGTCGATATTTCTGTTGTAGGTGTCACTACCTTCAGTGGACCTGAAGGCCCTTTTGATGTTGATGTTTTTGACTCTACTATAGATTACATAAAGTTAATGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211503092|gb|FL335421.1|FL335421
EST:     TAATACAAACGACA-TCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         N
genomic: TAATACAA-CGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcag-
EST: gi|211503092|gb|FL335421.1|FL335421
EST:     TAATACAAACGACA-TCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         N
genomic: TAATACAA-CGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcag-
EST: gi|211163859|gb|FL345453.1|FL345453
EST:     TAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCCAGAT                         GT-GATATTTCTGGTGTCGGTGTCAACAGCTTCAGTGGACCTGAAGGCCC
genomic: TAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACC-AGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCC
EST: gi|31349456|gb|CD433813.1|CD433813
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCTGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|211464475|gb|FL313832.1|FL313832
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAG-CCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|32921738|gb|CF026550.1|CF026550
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|211103216|gb|FL316257.1|FL316257
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAAGCGCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|31355827|gb|CD440184.1|CD440184
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCTGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|211126281|gb|FL366445.1|FL366445
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGATGGCCCT
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|211213801|gb|FL354211.1|FL354211
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|67035308|gb|CO463841.1|CO463841
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCTGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|211198397|gb|FL354123.1|FL354123
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTT-CTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCC
EST: gi|211038815|gb|FL358195.1|FL358195
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCTGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|211040491|gb|FL324026.1|FL324026
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGGTGTCGGTGTCACCAGCTTCAGTGGACCCGAAG
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAG
EST: gi|211446296|gb|FL306989.1|FL306989
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGGTGTCGGTGTCACCAGCTTCAGTGGACCTGAAG-CCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|60351626|gb|DN218599.1|DN218599
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|211087099|gb|FL367278.1|FL367278
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGGATATTNNCTGT-GTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTG-ATATTT-CTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCC
EST: gi|211160953|gb|FL361295.1|FL361295
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|149013083|gb|EE042782.2|EE042782
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|211016345|gb|FL361191.1|FL361191
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCTGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|211001599|gb|FL335869.1|FL335869
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAG-CCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|19822139|gb|BQ048163.1|BQ048163
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCTGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|67025909|gb|CO454658.1|CO454658
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|148945839|gb|EC891128.2|EC891128
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|31353391|gb|CD437748.1|CD437748
EST:     ATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GCTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCTGAAGGCCCC
genomic: ATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|211306566|gb|FL359152.1|FL359152
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGA
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGA
EST: gi|211153939|gb|FL327667.1|FL327667
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAG-CCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|211258211|gb|FL352267.1|FL352267
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAG-CCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|60351436|gb|DN218409.1|DN218409
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|31353888|gb|CD438245.1|CD438245
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCTGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|149109221|gb|EE190083.2|EE190083
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|211088149|gb|FL307534.1|FL307534
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTTCTGTTGTCGGGGTCAACAGC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTT-CTGTTGTCGGTGTCACCAGC
EST: gi|211125281|gb|FL351286.1|FL351286
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGGTGTCGGTGTCACCAGCTTCAGTGGACCCNGA-GGCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCC-GAAGGCCC
EST: gi|149017022|gb|EE045668.2|EE045668
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|67025687|gb|CO454436.1|CO454436
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGAC-TACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCAAANGCNCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|211133200|gb|FL313078.1|FL313078
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCCAGCT-CAGTGGACCCGAAGGGCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACC-AGCTTCAGTGGACCCGAAGGCCC
EST: gi|31356494|gb|CD440851.1|CD440851
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCTGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|67041650|gb|CO467905.1|CO467905
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCTGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|211040466|gb|FL323564.1|FL323564
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCT
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|84980113|gb|DW530462.1|DW530462
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTTACCAGCTTCAGTGGACCTGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|148945380|gb|EC890603.2|EC890603
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|211101215|gb|FL335616.1|FL335616
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAAGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|149099504|gb|EE185542.2|EE185542
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|149014023|gb|EE043541.2|EE043541
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtttattttaacaggttagtggattatttattttctcctactttactgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCCTTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGA
      ttttaac  putative branch site (score: 2)
 tttattttctcctact  putative PPT
 attatttattttct  TA-rich tract