1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttagttatgttcatttccttcgatctcactcgagcctatcagtttatcttgaatatttgcctcatacgaattatgattcttccattatacaagttttttcattgctgcaaccactttgtccctagcgaaaagctatcttcttaattatttgccttttcttaaactctagGGCAAGAGGTCACTGGAGTCCAGCAGTTACCAAAACACATTACCATCACCTGTTGCTCCAAGAATAAATATGGTCCACGAAGAGCTCGAGAGCGAGGATT
species | Zea mays |
transcript | GRMZM2G109032_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACAGTACCTTTGGCGACAGCTTCCATTATTTCTTCTACACTCTTAAGAAG GGCAAGAGGTCACTGGAGTCCAGCAGTTACCAAAACACATTACCATCACCTEST: gi|76289600|gb|DV029168.1|DV029168
genomic: ACAGTACCTTTGGCGACAGCTTCCATTATTTCTTCTACACTCTTAAGAAGgttagttatg ... taaactctagGGCAAGAGGTCACTGGAGTCCAGCAGTTACCAAAACACATTACCATCACCT
EST: ACAGTACCTTTGGCGACAGCTTCCATTATTTCTTCTACACTCTTAAGAAG GGCAAGAGGTCACTGGAGTCCAGCAGTTACCAAAACACATTACCATCACCTEST: gi|91055797|gb|EB166215.1|EB166215
genomic: ACAGTACCTTTGGCGACAGCTTCCATTATTTCTTCTACACTCTTAAGAAGgttagttatg ... taaactctagGGCAAGAGGTCACTGGAGTCCAGCAGTTACCAAAACACATTACCATCACCT
EST: ACAGTACCTTTGGCGACAGCTTCCATTATTTCTTCTACACTCTTAAGAAG GGCAAGAGGTCACTGGAGTCCAGCAGTTACCAAAACACATTACCATCACCTEST: gi|71770180|gb|DR968117.1|DR968117
genomic: ACAGTACCTTTGGCGACAGCTTCCATTATTTCTTCTACACTCTTAAGAAGgttagttatg ... taaactctagGGCAAGAGGTCACTGGAGTCCAGCAGTTACCAAAACACATTACCATCACCT
EST: ACAGTACCTTTGGCGACAGCTTCCATTATTTCTTCTACACTCTTAAGAAG GGCAAGAGGTCACTGGAGTCCAGCAGTTACCAAAACACATTACCATCACCT
genomic: ACAGTACCTTTGGCGACAGCTTCCATTATTTCTTCTACACTCTTAAGAAGgttagttatg ... taaactctagGGCAAGAGGTCACTGGAGTCCAGCAGTTACCAAAACACATTACCATCACCT
tttgtccctagcgaaaagctatcttcttaattatttgccttttcttaaactctagGGCAAGAGGTCACTGGAGTCCAGCAGTTACCAAAACACATTACCATCACCTGTTGCTCCAAGAATAAATATGGTCCACGAAGAGCTCGAGAGCGAGGATT
tcttaat putative branch site (score: 35)
ttatttgccttttctt CT-rich tract
tatcttcttaattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagttatgttcatttccttcgatctcactcgagcctatcagtttatcttgaatatttgcctcatacgaattatgattcttccattatacaagttttttcattgctgcaaccactttgtccctagcgaaaagctatcttcttaattatttgccttttcttaaactctagGGCAAGAGGTCACTGGAGTCCAGCAGTTACCAAAACACATTACCATCACCTGTTGCTCCAAGAATAAATATGGTCCACGAAGAGCTCGAGAGCGAGGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT