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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtatctgaagattgaacttctttggatacattttaactgtgaactctgaatgaaatggtaacaacatgaaaatttgctaatgctttaatgtagGTTGCTGTTAAGAAAATGAAGAAAAAGTATTATTCTTTTGAGGAATGTATGGGTTTGCGTGAAGTAAAG

Basic information

species Zea mays
transcript GRMZM2G108829_T03
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G108829_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os02g47220.1 (Oryza sativa), 3'ss of exon 5
gtatgtatctgaagattgaacttc---------tttggat---acattttaactgtgaactctgaatgaaatgg-taacaacatgaaaatttgctaatgctttaa--tgtagGTTGCTGTTAAGAAAATGAAGAAAAAGTATTATTCTTTTGAGGAATGTATGGGTTTGCGTGAAGTAAAG
||||||||||||||||  | |            | || ||   | | |||  |     | ||  | ||||||   ||||    || ||      |  |||  | |  | ||||| || ||||||||||||||||  || |||||||||||||||||||| ||| || | ||||||||||||
gtatgtatctgaagataaatccataggaggaaatatgcatttcatacttttgcaaaatattcccagtgaaataaataactgattgtaagcaaaatg-tgcactgatctatagGTGGCAGTTAAGAAAATGAAGAGGAAATATTATTCTTTTGAGGAATGCATGAGTCTACGTGAAGTAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47961778|gb|CN844487.1|CN844487
EST:     GGACTTTCGGNAGTGTATGGCGTGCTATAAATAAACAGAATGGTGAAGTT                         GTTGCTGTTAAGAAAATGAAGAAAAAGTATTATTCTTTTGAGGAATGTATG
genomic: GGACTTTCGGGAGTGTATGGCGTGCTATAAATAAACAGAATGGTGAAGTTgtatgtatct ... tttaatgtagGTTGCTGTTAAGAAAATGAAGAAAAAGTATTATTCTTTTGAGGAATGTATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgaactctgaatgaaatggtaacaacatgaaaatttgctaatgctttaatgtagGTTGCTGTTAAGAAAATGAAGAAAAAGTATTATTCTTTTGAGGAATGTATGGGTTTGCGTGAAGTAAAG
                           atgaaaattt  TA-rich tract