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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttacaaatattagaatgtggatctaataaacactaacattaaatctatgtattcaatgagagtttcggtttatattaatgattttcccacaattgatagGTGTGGAAGGAGGTTTTGGTGATCAAGAACCAGAATATGATGAAACTTTTGAAATAGTCATCTTACCTGATTTTATTTGTCTTCCATTTCCGTCAGTTGA

Basic information

species Zea mays
transcript GRMZM2G107696_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107696_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os01g08200.1 (Oryza sativa), 3'ss of exon 2
cttacaaatattagaatgtggatctaataaacactaacattaaatctatgtattcaatgagagtttcggtttatattaat--gattttcccacaattgatagGTGTGGAAGGAGGTTTTGGTGATCAAGAACCAGAATATGATGAAACTTTTGAAATAGTCATCTTACCTGATTTTATTTGTCTTCCATTTCCGTCAGTTGA
  |  | ||| | | || |   |||  |    | |  ||| |   | |     | |||| |  |  |  | | || ||||  |  ||| | |||||| ||||| ||||| ||||||||   |||||||||||| ||||| |||||  |||||||||| || ||||| ||||| |||| || ||| || ||||| ||| ||||
gatctatatagttgtattttc-tctgttctgtattcccatgatggcaaatagatgaatgcgt-tgaccatctttactaatccgggttttctacaatttatagGAGTGGAGGGAGGTTTCACTGATCAAGAACCCGAATACGATGAGGCTTTTGAAATTGTTATCTTGCCTGAATTTACTTCTCTCCCTTTTCCATCAATTGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22489369|gb|BU049292.1|BU049292
EST:     GCCCGACGAGGCGGATCGCCCGCTTAAGAAGCCCACCCTCCTCGCTATAG                         GTGTGGAAGGAGGTTTTGGTGATCAAGAACCAGAATATGATGAAACTTTTG
genomic: GCCCGACGAGGCGGATCGCCCGCTTAAGAAGCCCACCCTCCTCGCTATAGgtacatgttc ... caattgatagGTGTGGAAGGAGGTTTTGGTGATCAAGAACCAGAATATGATGAAACTTTTG
EST: gi|211002367|gb|FL015700.1|FL015700
EST:     GCCCGACGAGGCGGATCGCCCGCTTAAGAAGCCCACCCTCCTCGCTATAG                         GTGTGGAAGGAGGTTTTGGTGATCAAGAACCAGAATATGATGAAACTTTTG
genomic: GCCCGACGAGGCGGATCGCCCGCTTAAGAAGCCCACCCTCCTCGCTATAGgtacatgttc ... caattgatagGTGTGGAAGGAGGTTTTGGTGATCAAGAACCAGAATATGATGAAACTTTTG
EST: gi|32934870|gb|CF039682.1|CF039682
EST:     GCCCGACGAGGCGGATCGCCCGCTTAAGAAGCCCACCCTCCTCGCTATAG                         GTGTGGAAGGAGGTTTTGGTGATCAAGAACCAGAATATGATGAAACTTTTG
genomic: GCCCGACGAGGCGGATCGCCCGCTTAAGAAGCCCACCCTCCTCGCTATAGgtacatgttc ... caattgatagGTGTGGAAGGAGGTTTTGGTGATCAAGAACCAGAATATGATGAAACTTTTG
EST: gi|149014868|gb|EE044579.2|EE044579
EST:     GCCCGACGAGGCGGATCGCCCGCTTAAGAAGCCCACCCTCCTCGCTATAG                         GTGTGGAAGGAGGTTTTGGTGATCAAGAACCAGAATATGATGAAACTTTTG
genomic: GCCCGACGAGGCGGATCGCCCGCTTAAGAAGCCCACCCTCCTCGCTATAGgtacatgttc ... caattgatagGTGTGGAAGGAGGTTTTGGTGATCAAGAACCAGAATATGATGAAACTTTTG
EST: gi|17970241|gb|BM277005.1|BM277005
EST:     GCCCGACGAGGCGGATCGCCCGCTTAAGAAGCCCACCCTCCTCGCTATAG                         GTGTGGAAGGAGGTTTTGGTGATCAAGAACCAGAATATGATGAAACTTTTG
genomic: GCCCGACGAGGCGGATCGCCCGCTTAAGAAGCCCACCCTCCTCGCTATAGgtacatgttc ... caattgatagGTGTGGAAGGAGGTTTTGGTGATCAAGAACCAGAATATGATGAAACTTTTG
EST: gi|76924845|gb|DV170158.1|DV170158
EST:     GCCCGACGAGGCGGATCGCCCGCTTAAGAAGCCCACCCTCCTCGCTATAG                         GTGTGGAAGGAGGTTTTGGTGATCAAGAACCAGAATATGATGAAACTTTTG
genomic: GCCCGACGAGGCGGATCGCCCGCTTAAGAAGCCCACCCTCCTCGCTATAGgtacatgttc ... caattgatagGTGTGGAAGGAGGTTTTGGTGATCAAGAACCAGAATATGATGAAACTTTTG
EST: gi|87298812|gb|DY470815.1|DY470815
EST:     GCCCGACGAGGCGGATCGCCCGCTTAAGAAGCCCACCCTCCTCGCTATAG                         GTGTGGAAGGAGGTTTTGGTGATCAAGAACCAGAATATGATGAAACTTTTG
genomic: GCCCGACGAGGCGGATCGCCCGCTTAAGAAGCCCACCCTCCTCGCTATAGgtacatgttc ... caattgatagGTGTGGAAGGAGGTTTTGGTGATCAAGAACCAGAATATGATGAAACTTTTG
EST: gi|148962640|gb|EE013533.2|EE013533
EST:     GCCCGACGAGGCGGATCGCCCGCTTAAGAAGCCCACCCTCCTCGCTATAG                         GTGTGGAAGGAGGTTTTGGTGATCAAGAACCAGAATATGATGAAACTTTTG
genomic: GCCCGACGAGGCGGATCGCCCGCTTAAGAAGCCCACCCTCCTCGCTATAGgtacatgttc ... caattgatagGTGTGGAAGGAGGTTTTGGTGATCAAGAACCAGAATATGATGAAACTTTTG
EST: gi|18385124|gb|BM418323.1|BM418323
EST:     GCCCGACGAGGCGGATCGCCCGCTTAAGAAGCCCACCCTCCTCGCTATAG                         GTGTGGAAGGAGGTTTTGGTGATCAAGAACCAGAATATGATGAAACTTTTG
genomic: GCCCGACGAGGCGGATCGCCCGCTTAAGAAGCCCACCCTCCTCGCTATAGgtacatgttc ... caattgatagGTGTGGAAGGAGGTTTTGGTGATCAAGAACCAGAATATGATGAAACTTTTG
EST: gi|31363710|gb|CD448067.1|CD448067
EST:     GCCCGACGAGGCGGATCGCCCGCTTAAGAAGCCCACCCTCCTCGCTATAG                         GTGTGGAAGGAGGTTTTGGTGATCAAGAACCAGAATATGATGAAACTTTTG
genomic: GCCCGACGAGGCGGATCGCCCGCTTAAGAAGCCCACCCTCCTCGCTATAGgtacatgttc ... caattgatagGTGTGGAAGGAGGTTTTGGTGATCAAGAACCAGAATATGATGAAACTTTTG
EST: gi|32929603|gb|CF034415.1|CF034415
EST:     GCCCGACGAGGCGGATCGCCCGCTTAAGAAGCCCACCCTCCTCGCTATAG                         GTGTGGAAGGAGGTTTTGGTGATCAAGAACCAGAATATGATGAAACTTTTG
genomic: GCCCGACGAGGCGGATCGCCCGCTTAAGAAGCCCACCCTCCTCGCTATAGgtacatgttc ... caattgatagGTGTGGAAGGAGGTTTTGGTGATCAAGAACCAGAATATGATGAAACTTTTG
EST: gi|50331231|gb|CO526357.1|CO526357
EST:     GCCCGACGAGGCGGATCGCCCGCTTAAGAAGCCCACCCTCCTCGCTATAG                         GTGTGGAAGGAGGTTTTGGTGATCAAGAACCAGAATATGATGAAACTTTTG
genomic: GCCCGACGAGGCGGATCGCCCGCTTAAGAAGCCCACCCTCCTCGCTATAGgtacatgttc ... caattgatagGTGTGGAAGGAGGTTTTGGTGATCAAGAACCAGAATATGATGAAACTTTTG
EST: gi|148944899|gb|EC890058.2|EC890058
EST:     GCCCGACGAGGCGGATCGCCCGCTTAAGAAGCCCACCCTCCTCGCTATAG                         GTGTGGAAGGAGGTTTTGGTGATCAAGAACCAGAATATGATGAAACTTTTG
genomic: GCCCGACGAGGCGGATCGCCCGCTTAAGAAGCCCACCCTCCTCGCTATAGgtacatgttc ... caattgatagGTGTGGAAGGAGGTTTTGGTGATCAAGAACCAGAATATGATGAAACTTTTG
EST: gi|149109487|gb|EE190226.2|EE190226
EST:     GCCCGACGAGGCGGATCGCCCGCTTAAGAAGCCCACCCTCCTCGCTATAG                         GTGTGGAAGGAGGTTTTGGTGATCAAGAACCAGAATATGATGAAACTTTTG
genomic: GCCCGACGAGGCGGATCGCCCGCTTAAGAAGCCCACCCTCCTCGCTATAGgtacatgttc ... caattgatagGTGTGGAAGGAGGTTTTGGTGATCAAGAACCAGAATATGATGAAACTTTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatgtattcaatgagagtttcggtttatattaatgattttcccacaattgatagGTGTGGAAGGAGGTTTTGGTGATCAAGAACCAGAATATGATGAAACTTTTGAAATAGTCATCTTACCTGATTTTATTTGTCTTCCATTTCCGTCAGTTGA
                            tattaat  putative branch site (score: 2)
                                     ttttcccac  putative PPT
                        tttatattaatgattt  TA-rich tract