1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...agctagcaatagggtagaagttccctctgcccctattatttcactttttctaatcttgggatgcaaggagaatactgaacaagtcattttgtattttcagAAATGCACAGAGATGGGGGAAGTGGGCTAGCTCCCTGGCCTGCTCGATTAACAACCCCGCCTCCCCGTCTTGCTGATTTGTATGTTACTGCTGACACATT
species | Zea mays |
transcript | GRMZM2G107629_T03 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTCAGTATGGGGAGTGCCAATGGAAGCTTGCATTACTCCGTATCCTGAAC AAATTGGCACAGAGATGGGGGAAGTGGGCTAGCTCCCTGGCCTGCTCGATTEST: gi|87157567|gb|DY402356.1|DY402356
genomic: TTCAGTATGGGGAGTGCCAATGGAAGCTTGCATTACTCCGTATCCTGAACgtgagtagtt ... gtattttcagAAA-T-GCACAGAGATGGGGGAAGTGGGCTAGCTCCCTGGCCTGCTCGATT
EST: TTCAGTATGGGGAGTGCCAATGGAAGCTTGCATTACTCCGTATCCTGAAC AAATGCACAGAGATGGGGGAAGTGGGCTAGCTCCCTGGCCTGCTCGATTAAEST: gi|32825265|gb|CD964987.1|CD964987
genomic: TTCAGTATGGGGAGTGCCAATGGAAGCTTGCATTACTCCGTATCCTGAACgtgagtagtt ... gtattttcagAAATGCACAGAGATGGGGGAAGTGGGCTAGCTCCCTGGCCTGCTCGATTAA
EST: TTCAGTATGGGGAGTGCCAATGGAAGCTTGCATTACTCCGTATCCTGAAC AAATGCACAGAGATGGGGGAAGTGGGCTAGCTCCCTGGCCTGCTCGATTAEST: gi|22935914|gb|BU572189.1|BU572189
genomic: TTCAGTATGGGGAGTGCCAATGGAAGCTTGCATTACTCCGTATCCTGAACgtgagtagtt ... gtattttcagAAATGCACAGAGATGGGGGAAGTGGGCTAGCTCCCTGGCCTGCTCGATTA
EST: TTCAGTATGGGGAGTGCCAATGGAAGCTTGCATTACTCCGTATCCTGAAC AAATGCACAGAGATGGGGGAAGTGGGCTAGCTCCCTGGCCTGCTCGATTAA
genomic: TTCAGTATGGGGAGTGCCAATGGAAGCTTGCATTACTCCGTATCCTGAACgtgagtagtt ... gtattttcagAAATGCACAGAGATGGGGGAAGTGGGCTAGCTCCCTGGCCTGCTCGATTAA
ttttctaatcttgggatgcaaggagaatactgaacaagtcattttgtattttcagAAATGCACAGAGATGGGGGAAGTGGGCTAGCTCCCTGGCCTGCTCGATTAACAACCCCGCCTCCCCGTCTTGCTGATTTGTATGTTACTGCTGACACATT
ttctaat putative branch site (score: 130)
tattttc putative PPT
tcattttgtatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agctagcaatagggtagaagttccctctgcccctattatttcactttttctaatcttgggatgcaaggagaatactgaacaagtcattttgtattttcagAAATGCACAGAGATGGGGGAAGTGGGCTAGCTCCCTGGCCTGCTCGATTAACAACCCCGCCTCCCCGTCTTGCTGATTTGTATGTTACTGCTGACACATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT