1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tacaaataaagcctgtctcacgaataggcactagctagtccttctggtacacctcattgaatggtctgccatcttgattatcctgtccaatggtttttagGGTGAAGAACTTTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGCGCCAACTGTAAATTTGATCATCCTACAATGGCTGCTCCAATGGGAGTTT
species | Zea mays |
transcript | GRMZM2G107491_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGCCTTCCAATACGTCCA GGTGAAGAACTGTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGCEST: gi|32839671|gb|CD979352.1|CD979352
genomic: AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGTCTTCCAATACGTCCAgtaagttgtt ... tggtttttagGGTGAAGAACTTTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGC
EST: AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGCCTTCCAATACGTCCA GGTGAAGAACTGTGCAAATTCTATTCTCGCTATGGCATCTGCAAGTTCGGCEST: gi|32836606|gb|CD976284.1|CD976284
genomic: AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGTCTTCCAATACGTCCAgtaagttgtt ... tggtttttagGGTGAAGAACTTTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGC
EST: AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGCCTTCCAATACGTCCA GGTGAAGAACTGTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGCEST: gi|32920863|gb|CF025675.1|CF025675
genomic: AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGTCTTCCAATACGTCCAgtaagttgtt ... tggtttttagGGTGAAGAACTTTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGC
EST: AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGTCTTCCAATACGTCCA GGTGAAGAACTTTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGCEST: gi|32842543|gb|CD982224.1|CD982224
genomic: AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGTCTTCCAATACGTCCAgtaagttgtt ... tggtttttagGGTGAAGAACTTTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGC
EST: AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGCCTTCCAATACGTCCA GGTGAAGAACTGTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGCEST: gi|24934304|gb|CA452522.1|CA452522
genomic: AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGTCTTCCAATACGTCCAgtaagttgtt ... tggtttttagGGTGAAGAACTTTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGC
EST: AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGTCTTCCAATACGTCCA GGTGAAGAACTTTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGCEST: gi|32921366|gb|CF026178.1|CF026178
genomic: AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGTCTTCCAATACGTCCAgtaagttgtt ... tggtttttagGGTGAAGAACTTTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGC
EST: AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGTCTTCCAATACGTCCA GGTGAAGAACTTTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGCEST: gi|32837496|gb|CD977174.1|CD977174
genomic: AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGTCTTCCAATACGTCCAgtaagttgtt ... tggtttttagGGTGAAGAACTTTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGC
EST: AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGCCTTCCAATACGTCCA GGTGAAGAACTGTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGCEST: gi|76290171|gb|DV029739.1|DV029739
genomic: AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGTCTTCCAATACGTCCAgtaagttgtt ... tggtttttagGGTGAAGAACTTTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGC
EST: AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGTCTTCCAATACGTCCA GGTGAAGAACTTTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGCEST: gi|32921013|gb|CF025825.1|CF025825
genomic: AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGTCTTCCAATACGTCCAgtaagttgtt ... tggtttttagGGTGAAGAACTTTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGC
EST: AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGTCTTCCAATACGTCCA GGTGAAGAACTTTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGCEST: gi|32920651|gb|CF025463.1|CF025463
genomic: AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGTCTTCCAATACGTCCAgtaagttgtt ... tggtttttagGGTGAAGAACTTTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGC
EST: AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGTCTTCCAATACGTCCA GGTGAAGAACTTTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGCEST: gi|32838677|gb|CD978355.1|CD978355
genomic: AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGTCTTCCAATACGTCCAgtaagttgtt ... tggtttttagGGTGAAGAACTTTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGC
EST: AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGCCTTCCAATACGTCCA GGTGAAGAACTGTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGC
genomic: AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGTCTTCCAATACGTCCAgtaagttgtt ... tggtttttagGGTGAAGAACTTTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGC
ggtacacctcattgaatggtctgccatcttgattatcctgtccaatggtttttagGGTGAAGAACTTTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGCGCCAACTGTAAATTTGATCATCCTACAATGGCTGCTCCAATGGGAGTTT
tcttgat putative branch site (score: 91)
ttttt putative PPT
ttgattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacaaataaagcctgtctcacgaataggcactagctagtccttctggtacacctcattgaatggtctgccatcttgattatcctgtccaatggtttttagGGTGAAGAACTTTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGCGCCAACTGTAAATTTGATCATCCTACAATGGCTGCTCCAATGGGAGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT