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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtctcattgaatttttattttgacttatttatattaatgtggttagcacttgattaattatttgcctattctcctgaacttttgatgaagGAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCATAACATCAACTTTGGCTTTCGCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACC

Basic information

species Zea mays
transcript GRMZM2G107106_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G868981_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os08g41010.4 (Oryza sativa), 3'ss of exon 6
gtatgtctcattgaatttttattttgacttatttatattaatgtggttagcacttgattaattatttgcctattctcctgaacttttgatgaagGAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCATAACATCAACTTTGGCTTTCGCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACC
|||| | |  |  |||    |||||||||  |    ||| || | |||  |  ||| ||   |||||     ||||  ||||||||   |  ||||||||| ||||||||||||||| | || || |||||| | ||||| |||||||  || || ||||||||||| |||||||||||||| ||||| |||||
gtatatattttcaaatga--attttgactgttc---attgattttgttgtccattggtt---tattt-----ttcttatgaacttt-attttagGAGCTGGGCGTGATAATGATTGGAAATGCCCTAATTGCAACAACATTAACTTTGCATTCCGGACAGTCTGTAACATGAGAAAGTGCAATACACCAAGACC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32929362|gb|CF034174.1|CF034174
EST:     CACGAGGGCTGGCTCATATTCCGATGAAGGTTCTCAGAAGAAGCCTGCAG                         GAGCTGGCCGTGATAATGATTGGGAGTGCCCAAATTGCCATAACATCAACT
genomic: CACAAGGGCTGGCTCATATTCTGATGAAGGTTCTCAGAAGAAGCCTGCAGgtatgtctca ... tttgatgaagGAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCATAACATCAACT
EST: gi|71765408|gb|DR963345.1|DR963345
EST:     CACAAGGGCTGGCTCATATTCTGATGAAGGTTCTCAGAAGAAGCCTGCAG                         GAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGGCATAACATCAACT
genomic: CACAAGGGCTGGCTCATATTCTGATGAAGGTTCTCAGAAGAAGCCTGCAGgtatgtctca ... tttgatgaagGAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCATAACATCAACT
EST: gi|71439462|gb|DR820512.1|DR820512
EST:     CACAAGGGCTGGCTCATATTCTGATGAAGGTTCTCAGAAGAAGCCTGCAG                         GAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCATAACATCAACT
genomic: CACAAGGGCTGGCTCATATTCTGATGAAGGTTCTCAGAAGAAGCCTGCAGgtatgtctca ... tttgatgaagGAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCATAACATCAACT
EST: gi|74243877|gb|DT651791.1|DT651791
EST:     ACAAGGGCTGGCTCATATTCTGATGAAGGTTCTCAGAAGAAAGC-TGCAG                         GAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCATAACATCAAC
genomic: ACAAGGGCTGGCTCATATTCTGATGAAGGTTCTCAGAAGAA-GCCTGCAGgtatgtctca ... tttgatgaagGAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCATAACATCAAC
EST: gi|71439479|gb|DR820529.1|DR820529
EST:     CACAAGGGCTGGCTCATATTCTGATGAAGGTTCTCAGAAGAAGCCTGCAG                         GAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCATAACATCAACT
genomic: CACAAGGGCTGGCTCATATTCTGATGAAGGTTCTCAGAAGAAGCCTGCAGgtatgtctca ... tttgatgaagGAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCATAACATCAACT
EST: gi|31353283|gb|CD437640.1|CD437640
EST:     CACAAGGGCTGGCTCATATTCCGATGAAGGTTCTCAGAAGAAGCCTGCAG                         GAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCATAACATCAACT
genomic: CACAAGGGCTGGCTCATATTCTGATGAAGGTTCTCAGAAGAAGCCTGCAGgtatgtctca ... tttgatgaagGAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCATAACATCAACT
EST: gi|61119710|gb|DN560671.1|DN560671
EST:     CACAAGGGCTGGCTCATATTCTGATGAAGGTTCTCAGAAGAAGCCTGCAG                         GAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCATAACATCAACT
genomic: CACAAGGGCTGGCTCATATTCTGATGAAGGTTCTCAGAAGAAGCCTGCAGgtatgtctca ... tttgatgaagGAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCATAACATCAACT
EST: gi|32929980|gb|CF034792.1|CF034792
EST:     CACAAGGGCTGGCTCATATTCCGATGAAGGTTCTCAGAAGAAGCCTGCAG                         GAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCATAACATCAACT
genomic: CACAAGGGCTGGCTCATATTCTGATGAAGGTTCTCAGAAGAAGCCTGCAGgtatgtctca ... tttgatgaagGAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCATAACATCAACT
EST: gi|71313388|gb|DR793244.1|DR793244
EST:     CACAAGGGCTGGCTCATATTCTGATGAAGGTTCTCAGAAGAAGCCTGCAG                         GAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCATAACATCAACT
genomic: CACAAGGGCTGGCTCATATTCTGATGAAGGTTCTCAGAAGAAGCCTGCAGgtatgtctca ... tttgatgaagGAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCATAACATCAACT
EST: gi|71313389|gb|DR793245.1|DR793245
EST:     CACAAGGGCTGGCTCATATTCTGATGAAGGTTCTCAGAAGAAGCCTGCAG                         GAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCATAACATCAACT
genomic: CACAAGGGCTGGCTCATATTCTGATGAAGGTTCTCAGAAGAAGCCTGCAGgtatgtctca ... tttgatgaagGAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCATAACATCAACT
EST: gi|78115667|gb|DV534055.1|DV534055
EST:     CACAAGGGCTGGCTCATATTCTGATGAAGGTTCTCAGAAGAAGCCTGCAG                         GAGCTGGCCGTGAATA-TGATTGGGAGTG
genomic: CACAAGGGCTGGCTCATATTCTGATGAAGGTTCTCAGAAGAAGCCTGCAGgtatgtctca ... tttgatgaagGAGCTGGCCGTGA-TAATGATTGGGAGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgtggttagcacttgattaattatttgcctattctcctgaacttttgatgaagGAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCATAACATCAACTTTGGCTTTCGCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACC
                                           ctttt  CT-rich tract
            acttgattaattattt  TA-rich tract