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...gttaaaagttaattgcccttttaacctacattacgatttacgaggatacaattttgttttacaaatgtagacacactaatgtccttcctcttctgtttagGGGATTCCTGAACAAATGGATGTTCCTACATCACCTCCGAGTATCCAGCCAGTCAATCCTGTCCAGGCTGCACAAGCAGCTCAAACTGCAGCTCCATCTG
species | Zea mays |
transcript | GRMZM2G105772_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGCGGGTTGCGTATAACAACCCAGAGCGCGCTGTTGAGTACTTATATTCT GGGATTCCTGAACAAATGGATGTTCCTACATCAGCTCCGAGTATCCAGCCAEST: gi|148969759|gb|EE020640.2|EE020640
genomic: TGCGGGTTGCGTATAACAACCCAGAGCGCGCTGTTGAGTACTTATATTCTgtaagaatga ... ttctgtttagGGGATTCCTGAACAAATGGATGTTCCTACATCACCTCCGAGTATCCAGCCA
EST: TGCGGGTTGCGTATAACAACCCAGAGCGCGCTGTTGAGTACTTATATTCT GGGATTCCTGAACAAATGGATGTTCCTACATCACCTCCGAGTATCCAGCCAEST: gi|60396086|gb|DN228955.1|DN228955
genomic: TGCGGGTTGCGTATAACAACCCAGAGCGCGCTGTTGAGTACTTATATTCTgtaagaatga ... ttctgtttagGGGATTCCTGAACAAATGGATGTTCCTACATCACCTCCGAGTATCCAGCCA
EST: TGCGGGTTGCGTATAACAACCCAGAGCGCGCTGTTGAGTACTTATATTCT GGGATTCCTGAACAAATGGATGTTCCTACATCACCTCCGEST: gi|78118533|gb|DV536917.1|DV536917
genomic: TGCGGGTTGCGTATAACAACCCAGAGCGCGCTGTTGAGTACTTATATTCTgtaagaatga ... ttctgtttagGGGATTCCTGAACAAATGGATGTTCCTACATCACCTCCG
EST: TGCGGGTTGCGTATAACAACCCAGAGCGCGCTGTTGAGTACTTATATTCT GGGATTCCTGAACAAATGGATGTTCCTACATCACCTCCGAGTATCCAGCCAEST: gi|148991633|gb|EE033168.2|EE033168
genomic: TGCGGGTTGCGTATAACAACCCAGAGCGCGCTGTTGAGTACTTATATTCTgtaagaatga ... ttctgtttagGGGATTCCTGAACAAATGGATGTTCCTACATCACCTCCGAGTATCCAGCCA
EST: TGCGGGTTGCGTATAACAACCCAGAGCGCGCTGTTGAGTACTTATATTCT GGGATTCCTGAACAAAEST: gi|91876143|gb|EB406100.1|EB406100
genomic: TGCGGGTTGCGTATAACAACCCAGAGCGCGCTGTTGAGTACTTATATTCTgtaagaatga ... ttctgtttagGGGATTCCTGAACAAA
EST: TGCGGGTTGCGTATAACAACCCAGAGCGCGCTGTTGAGTACTTATATTCT GGGATTCCTGAACAAATGGATGTTCCTACATCACCTEST: gi|74240960|gb|DT648874.1|DT648874
genomic: TGCGGGTTGCGTATAACAACCCAGAGCGCGCTGTTGAGTACTTATATTCTgtaagaatga ... ttctgtttagGGGATTCCTGAACAAATGGATGTTCCTACATCACCT
EST: TGCGGGTTGCGTATAACAACCCAGAGCGCGCTGTTGAGTACTTATATTCT GGGATTCCTGAACAAATGGATGTTCCTACATCACCTCCGAGTATCCAGEST: gi|76011555|gb|DT938725.1|DT938725
genomic: TGCGGGTTGCGTATAACAACCCAGAGCGCGCTGTTGAGTACTTATATTCTgtaagaatga ... ttctgtttagGGGATTCCTGAACAAATGGATGTTCCTACATCACCTCCGAGTATCCAG
EST: TGCGGGTTGCGTATAACAACCCAGAGCGCGCTGTTGAGTACTTATATTCT GGGATTCCTGNAACAA-TGGATGTTCCTACATCACCTCCGAGTATCCAGCCEST: gi|148956696|gb|EC902566.2|EC902566
genomic: TGCGGGTTGCGTATAACAACCCAGAGCGCGCTGTTGAGTACTTATATTCTgtaagaatga ... ttctgtttagGGGATTCCTG-AACAAATGGATGTTCCTACATCACCTCCGAGTATCCAGCC
EST: TGCGGGTTGCGTATAACAACCCAGAGCGCGCTGTTGAGTACTTATATTCT GGGATTCCTGAACAAATGGATGTTCCTACATCACCTCCGAGTATCCAGCCAEST: gi|149001065|gb|EE038319.2|EE038319
genomic: TGCGGGTTGCGTATAACAACCCAGAGCGCGCTGTTGAGTACTTATATTCTgtaagaatga ... ttctgtttagGGGATTCCTGAACAAATGGATGTTCCTACATCACCTCCGAGTATCCAGCCA
EST: TGCGGGTTGCGTATAACAACCCAGAGCGCGCTGTTGAGTACTTATATTCT GGGATTCCTGAACAAATGGATGTTCCCTACATCACCTCCGAGTATCCAGCCEST: gi|91057192|gb|EB167610.1|EB167610
genomic: TGCGGGTTGCGTATAACAACCCAGAGCGCGCTGTTGAGTACTTATATTCTgtaagaatga ... ttctgtttagGGGATTCCTGAACAAATGGATGTTCC-TACATCACCTCCGAGTATCCAGCC
EST: TGCGGGTTGCGTATAACAACCCAGAGCGCGCTGTTGAGTACTTATATTCT GGGATTCCTGAACAAATGGATGTTCCTACATCACCTCCGAGTATCCAGCCAEST: gi|149096952|gb|EE182751.2|EE182751
genomic: TGCGGGTTGCGTATAACAACCCAGAGCGCGCTGTTGAGTACTTATATTCTgtaagaatga ... ttctgtttagGGGATTCCTGAACAAATGGATGTTCCTACATCACCTCCGAGTATCCAGCCA
EST: TGCGGGTTGCGTATAACAACCCAGAGCGCGCTGTTGAGTACTTATATTCT GGGATTCCTGAACAAATGGATGTTCCTACATCACCTCCGAGTATCCAGCCA
genomic: TGCGGGTTGCGTATAACAACCCAGAGCGCGCTGTTGAGTACTTATATTCTgtaagaatga ... ttctgtttagGGGATTCCTGAACAAATGGATGTTCCTACATCACCTCCGAGTATCCAGCCA
atacaattttgttttacaaatgtagacacactaatgtccttcctcttctgtttagGGGATTCCTGAACAAATGGATGTTCCTACATCACCTCCGAGTATCCAGCCAGTCAATCCTGTCCAGGCTGCACAAGCAGCTCAAACTGCAGCTCCATCTG
cactaat putative branch site (score: 81)
tgtccttcctcttctg CT-rich tract
attttgttttacaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaaaagttaattgcccttttaacctacattacgatttacgaggatacaattttgttttacaaatgtagacacactaatgtccttcctcttctgtttagGGGATTCCTGAACAAATGGATGTTCCTACATCACCTCCGAGTATCCAGCCAGTCAATCCTGTCCAGGCTGCACAAGCAGCTCAAACTGCAGCTCCATCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC