1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtctgtccctccaaacacgaacccgtcgaatcaaactctctaagctgcacagagcacgtctgactggatccggaagtctaggccaggtggaacgtggccgctagctaactcgtcgcgtgctactgactgtgacgcagAAAGTGACGATCTGGAAGAAGATCCACGTCATCTACAACTTCTTCCTGATACGCAAGATCATCGCGCACATCATCACCTTCTCGTTCTACTGCGTCATCA
species | Zea mays |
transcript | GRMZM2G105631_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCCCGGCGAACCTGTTCAGGAAGATGCTCATGGAGATTGTGACGAACAAG AAAGTGACGATCTGGTTGTTAGATCCACGTCATCTACAACTTCTTCCTGATEST: gi|211023209|gb|FK976627.1|FK976627
genomic: GCCCGGCGAACCTGTTCAGGAAGATGCTCATGGAGATTGTGACGAACAAGgtctgtccct ... tgtgacgcagAAAGTGACGATCTGGAAG-AAGATCCACGTCATCTACAACTTCTTCCTGAT
EST: GCCCGGCGAACCTGTTCAGGAAGATGCTCATGGAGATTGTGACGAACAAG AAAGTGACGATCTGGAAGAAGATCCACGTCATCTACAACTTCTTCCTGATAEST: gi|93284005|gb|EB676269.1|EB676269
genomic: GCCCGGCGAACCTGTTCAGGAAGATGCTCATGGAGATTGTGACGAACAAGgtctgtccct ... tgtgacgcagAAAGTGACGATCTGGAAGAAGATCCACGTCATCTACAACTTCTTCCTGATA
EST: GCCCGGCGAACCTGTTCAGGAAGATGCTCATGGAGATTGTGACGAACAAG AAAGTGACGATCTGGAAGAAGATCCACGTCATCTACAACTTCTTCCTGATAEST: gi|71448756|gb|DR829806.1|DR829806
genomic: GCCCGGCGAACCTGTTCAGGAAGATGCTCATGGAGATTGTGACGAACAAGgtctgtccct ... tgtgacgcagAAAGTGACGATCTGGAAGAAGATCCACGTCATCTACAACTTCTTCCTGATA
EST: GCCCGGCGAACCTGTTCAGGAAGATGCTCATGGAGATTGTGACGAACAAG AAAGTGACGATCTGGAAGAAGATCCACGTCATCTACAACTTCTTCCTGATAEST: gi|29167909|gb|CB411169.1|CB411169
genomic: GCCCGGCGAACCTGTTCAGGAAGATGCTCATGGAGATTGTGACGAACAAGgtctgtccct ... tgtgacgcagAAAGTGACGATCTGGAAGAAGATCCACGTCATCTACAACTTCTTCCTGATA
EST: GCCCGGCGAACCTGTTCAGGAAGATGCTCATGGAGATTGTGACGAACAAG AAAGTGACGATCTGGAAGAAGATCCACGTCATCTACAACTTCTTCCTGATAEST: gi|33467925|gb|CF244974.1|CF244974
genomic: GCCCGGCGAACCTGTTCAGGAAGATGCTCATGGAGATTGTGACGAACAAGgtctgtccct ... tgtgacgcagAAAGTGACGATCTGGAAGAAGATCCACGTCATCTACAACTTCTTCCTGATA
EST: GCCCGGCGAACCTGTTCAGGAAGATGCTCATGGAGATTGTGACGAACAAG AAAGCGACGATCTGGAAGAAGATCCACGTCATCTACAACTTCTTCCTGATAEST: gi|211023212|gb|FK976630.1|FK976630
genomic: GCCCGGCGAACCTGTTCAGGAAGATGCTCATGGAGATTGTGACGAACAAGgtctgtccct ... tgtgacgcagAAAGTGACGATCTGGAAGAAGATCCACGTCATCTACAACTTCTTCCTGATA
EST: GCCCGGCGAACCTGTTCAGGAAGATGCTCATGGAGATTGTGACGAACAAG AAAGTGACGATCTGGAAGAAGATCCACGTCATCTACAACTTCTTCCTGATAEST: gi|71330488|gb|DR802010.1|DR802010
genomic: GCCCGGCGAACCTGTTCAGGAAGATGCTCATGGAGATTGTGACGAACAAGgtctgtccct ... tgtgacgcagAAAGTGACGATCTGGAAGAAGATCCACGTCATCTACAACTTCTTCCTGATA
EST: GCCCGGCGAACCTGTTCAGGAAGATGCTCATGGAGATTGTGACGAACAAG AAAGTGACGATCTGGAAGAAGATCCACGTCATCTACAACTTCTTCCTGATAEST: gi|76018154|gb|DT945324.1|DT945324
genomic: GCCCGGCGAACCTGTTCAGGAAGATGCTCATGGAGATTGTGACGAACAAGgtctgtccct ... tgtgacgcagAAAGTGACGATCTGGAAGAAGATCCACGTCATCTACAACTTCTTCCTGATA
EST: GCCCGGCGAACCTGTTCAGGAAGATGCTCATGGAGATTGTGACGAACAAG AAAGTGACGATCTGGAAGAAGATCCACGTCATCTACAACTTCTTCCTGATAEST: gi|76020765|gb|DT947935.1|DT947935
genomic: GCCCGGCGAACCTGTTCAGGAAGATGCTCATGGAGATTGTGACGAACAAGgtctgtccct ... tgtgacgcagAAAGTGACGATCTGGAAGAAGATCCACGTCATCTACAACTTCTTCCTGATA
EST: GCCCGGCGAACCTGTTCAGGAAGATGCTCATGGAGATTGTGACGAACAAG AAAGTGACGATCTGGAAGAAGATCCACGTCATCTACAACTTCTTCCTGATAEST: gi|116829022|gb|EC863362.1|EC863362
genomic: GCCCGGCGAACCTGTTCAGGAAGATGCTCATGGAGATTGTGACGAACAAGgtctgtccct ... tgtgacgcagAAAGTGACGATCTGGAAGAAGATCCACGTCATCTACAACTTCTTCCTGATA
EST: GCCCGGCGAACCTGTTCAGGAAGATGCTCATGGAGATTGTGACGAACAAG AAAGTGACGATCTGGAAGAAGATCCACGTCATCTACAACTTCTTCCTGATAEST: gi|88757584|gb|DY541725.1|DY541725
genomic: GCCCGGCGAACCTGTTCAGGAAGATGCTCATGGAGATTGTGACGAACAAGgtctgtccct ... tgtgacgcagAAAGTGACGATCTGGAAGAAGATCCACGTCATCTACAACTTCTTCCTGATA
EST: GCCCGGCGAACCTGTTCAGGAAGATGCTCATGGAGATTGTGACGAACAAG AAAGTGACGATCTGGAAGAAGATCCACGTCATCTACAACTTCTTCCTGATA
genomic: GCCCGGCGAACCTGTTCAGGAAGATGCTCATGGAGATTGTGACGAACAAGgtctgtccct ... tgtgacgcagAAAGTGACGATCTGGAAGAAGATCCACGTCATCTACAACTTCTTCCTGATA
ccaggtggaacgtggccgctagctaactcgtcgcgtgctactgactgtgacgcagAAAGTGACGATCTGGAAGAAGATCCACGTCATCTACAACTTCTTCCTGATACGCAAGATCATCGCGCACATCATCACCTTCTCGTTCTACTGCGTCATCA
tactgac putative branch site (score: 296)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgtccctccaaacacgaacccgtcgaatcaaactctctaagctgcacagagcacgtctgactggatccggaagtctaggccaggtggaacgtggccgctagctaactcgtcgcgtgctactgactgtgacgcagAAAGTGACGATCTGGAAGAAGATCCACGTCATCTACAACTTCTTCCTGATACGCAAGATCATCGCGCACATCATCACCTTCTCGTTCTACTGCGTCATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA