1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gatatcatagccaagagagaatatttcaccagacgtttattgttctggcaacttgaaatgatgatgttgtatcacgttgagctttgccttctttttgcagCTGAGGAGTAAGATTGCTTCTGCAACATCAGCTATTAAATCAGTATTTGGACAAGAGGTCCAACAGCAGGATGCA
species | Zea mays |
transcript | GRMZM2G105539_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TATTATCCTTGCCAGATTTCTTGGATGCGTCCATTGGGAAAATCTTGAAG CTGAGGAGTAAGATTGCTTCTGCAACATCAGCTATTAAATCAGTATTTGGAEST: gi|148958813|gb|EC905077.2|EC905077
genomic: TATTATCCTTGCCAGATTTCTTGGATGCGTCCATTGGGAAAATCTTGAAGgtatttgttg ... ctttttgcagCTGAGGAGTAAGATTGCTTCTGCAACATCAGCTATTAAATCAGTATTTGGA
EST: TATTATCCTTGCCAGATTTCTTGGATGCGTCCATTGGGAAAATCTTGAAG CTGAGGAGTAAGATTGCTTCTGCAACATCAGCTATTAAATCAGTATTTGGAEST: gi|5846791|gb|AI999874.1|AI999874
genomic: TATTATCCTTGCCAGATTTCTTGGATGCGTCCATTGGGAAAATCTTGAAGgtatttgttg ... ctttttgcagCTGAGGAGTAAGATTGCTTCTGCAACATCAGCTATTAAATCAGTATTTGGA
EST: TATTATCCTTGCCAGATTTCTTGGATGCGTCCATTGGGAAAATCTTGAAG CTGAGGAGTAAGATTGCTTCTGCAACATCAGCTATTAAATCAGTATTTGGAEST: gi|6973389|gb|AW438083.1|AW438083
genomic: TATTATCCTTGCCAGATTTCTTGGATGCGTCCATTGGGAAAATCTTGAAGgtatttgttg ... ctttttgcagCTGAGGAGTAAGATTGCTTCTGCAACATCAGCTATTAAATCAGTATTTGGA
EST: TATTATCCTTGCCAGATTTCTTGGATGCGTCCATTGGCAAAATCTTGAAG CTGAGGAGTAAGACTGCTTCTGCAACATCAGCTATTAAATCAGTATTTGGAEST: gi|6031284|gb|AW076291.1|AW076291
genomic: TATTATCCTTGCCAGATTTCTTGGATGCGTCCATTGGGAAAATCTTGAAGgtatttgttg ... ctttttgcagCTGAGGAGTAAGATTGCTTCTGCAACATCAGCTATTAAATCAGTATTTGGA
EST: TATTATCCTTGCCAGATTTCTTGGATGCGTCCATTGGGAAAATCTTGAAG CTGAGGAGTAAGATTGCTTCTGCAACATCAGCTATTAAATCAGTATTTGGAEST: gi|5296253|gb|AI782933.1|AI782933
genomic: TATTATCCTTGCCAGATTTCTTGGATGCGTCCATTGGGAAAATCTTGAAGgtatttgttg ... ctttttgcagCTGAGGAGTAAGATTGCTTCTGCAACATCAGCTATTAAATCAGTATTTGGA
EST: TATTATCCTTGCCAGATTTCTTGGATGCGTCCATTGGGAAAATCTTGAAG CTGAGGAGTAAGATTGCTTCTGCAACATCAGCTATTAAATCAGTATTTGGAEST: gi|211363054|gb|FL031142.1|FL031142
genomic: TATTATCCTTGCCAGATTTCTTGGATGCGTCCATTGGGAAAATCTTGAAGgtatttgttg ... ctttttgcagCTGAGGAGTAAGATTGCTTCTGCAACATCAGCTATTAAATCAGTATTTGGA
EST: ATTATCCGTTGCCAGATTTCTTGGATGCGTCCATTGGGAAAATCTTGAAG CTGAGGAGTAAGATTGCTTCTGCAACATCAGCTATTAAATCAGTATTTGGAEST: gi|148962847|gb|EE013769.2|EE013769
genomic: ATTATCC-TTGCCAGATTTCTTGGATGCGTCCATTGGGAAAATCTTGAAGgtatttgttg ... ctttttgcagCTGAGGAGTAAGATTGCTTCTGCAACATCAGCTATTAAATCAGTATTTGGA
EST: TATTATCCTTGCCAGATTTCTTGGATGCGTCCATTGGGAAAATCTTGAAG CTGAAGAGTAAGATTGCTTCTGEST: gi|6973390|gb|AW438084.1|AW438084
genomic: TATTATCCTTGCCAGATTTCTTGGATGCGTCCATTGGGAAAATCTTGAAGgtatttgttg ... ctttttgcagCTGAGGAGTAAGATTGCTTCTG
EST: TATTATCCTTGCCAGATTTCTTGGATGCGTCCATTGGGAAAATCTTGAAG CTGANGAGTAAGATTGCTTCTGCAACATCAGCTATTAAATCAGTATTTGGAEST: gi|18385084|gb|BM418283.1|BM418283
genomic: TATTATCCTTGCCAGATTTCTTGGATGCGTCCATTGGGAAAATCTTGAAGgtatttgttg ... ctttttgcagCTGAGGAGTAAGATTGCTTCTGCAACATCAGCTATTAAATCAGTATTTGGA
EST: TATTATCCTTGCCAGATTTCTTGGATGCGTCCATTGGGAAAATCTTGAAG CTGAGGAGTAAGATTGCTTCTGCAACATCAGCTATTAAATCAGTATTTGGAEST: gi|87152689|gb|DY397478.1|DY397478
genomic: TATTATCCTTGCCAGATTTCTTGGATGCGTCCATTGGGAAAATCTTGAAGgtatttgttg ... ctttttgcagCTGAGGAGTAAGATTGCTTCTGCAACATCAGCTATTAAATCAGTATTTGGA
EST: TATTATCCTTGCCAGATTTCTTGGATGCGTCCATTGGGAAAATCTTGAAG CTGAGGAGTAAGATTGCTTCTGCAACATCAGCTATTAAATCAGTATTTGGAEST: gi|22489513|gb|BU049436.1|BU049436
genomic: TATTATCCTTGCCAGATTTCTTGGATGCGTCCATTGGGAAAATCTTGAAGgtatttgttg ... ctttttgcagCTGAGGAGTAAGATTGCTTCTGCAACATCAGCTATTAAATCAGTATTTGGA
EST: TATTATCCTTGCCAGATTTCTTGGATGCGTCCATTGGGAAAATCTTGAAG CTGAGGAGTAAGATTGCTTCTGCAACATCAGCTATTAAATCAGTATTTGGA
genomic: TATTATCCTTGCCAGATTTCTTGGATGCGTCCATTGGGAAAATCTTGAAGgtatttgttg ... ctttttgcagCTGAGGAGTAAGATTGCTTCTGCAACATCAGCTATTAAATCAGTATTTGGA
tggcaacttgaaatgatgatgttgtatcacgttgagctttgccttctttttgcagCTGAGGAGTAAGATTGCTTCTGCAACATCAGCTATTAAATCAGTATTTGGACAAGAGGTCCAACAGCAGGATGCA
ctttgccttctttttg CT-rich tract
ttcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatatcatagccaagagagaatatttcaccagacgtttattgttctggcaacttgaaatgatgatgttgtatcacgttgagctttgccttctttttgcagCTGAGGAGTAAGATTGCTTCTGCAACATCAGCTATTAAATCAGTATTTGGACAAGAGGTCCAACAGCAGGATGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - caccaga
- - - - - - - - - - - - - - - - - - - - tgttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgat