1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttatgcctggcgaaccaatgcaatatttatgtatatatacgtacccgtacgtaaaaaggtgtctgattccctttaatcactctctgatatttttttatagGCGCAGAGAGAAAGCAGGCACAGCATATTTCCAGAAGACCCTGGCCAG
species | Zea mays |
transcript | GRMZM2G105494_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CCAAGCAGAATCAGCAGCTCCACGAGGCTAGT GCGCAGAGAGAAAGCAGGCACAGCATATTTCCAGAAGACCCTGGCCAGEST: gi|71756872|gb|DR954809.1|DR954809
genomic: CCAAGCAGAATCAGCAGCTCCACGAGGCTAGTgtgagtagta ... ttttttatagGCGCAGAGAGAAAGCAGGCACAGCATATTTCCAGAAGACCCTGGCCAG
EST: CAGAATCAGCAGCTCCACGAGGCTAGT GCGCAGAGAGAAAGCAGGCACAGCATATTGCCAGAAGACCCTGGCCAGEST: gi|78084337|gb|DV512730.1|DV512730
genomic: CAGAATCAGCAGCTCCACGAGGCTAGTgtgagtagta ... ttttttatagGCGCAGAGAGAAAGCAGGCACAGCATATTTCCAGAAGACCCTGGCCAG
EST: ATGGAGGTGGGGGCGGCTCCAAGCAGAATCAGCAGCTCCACGAGGCTAGT GCGCAGAGAGAAAGCAGGCACAGCATATTTCCAGAAGACCCTGGCCAG
genomic: ATGGAGGTGGGGGCGGCTCCAAGCAGAATCAGCAGCTCCACGAGGCTAGTgtgagtagta ... ttttttatagGCGCAGAGAGAAAGCAGGCACAGCATATTTCCAGAAGACCCTGGCCAG
cgtacgtaaaaaggtgtctgattccctttaatcactctctgatatttttttatagGCGCAGAGAGAAAGCAGGCACAGCATATTTCCAGAAGACCCTGGCCAG
ctctgat putative branch site (score: 4)
tattttttt CT-rich tract
tctgatatttttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatgcctggcgaaccaatgcaatatttatgtatatatacgtacccgtacgtaaaaaggtgtctgattccctttaatcactctctgatatttttttatagGCGCAGAGAGAAAGCAGGCACAGCATATTTCCAGAAGACCCTGGCCAG
- -tgcctgg
- - - - - - - -caatgca
- - - - - - - - - - - - - -tatgtat
- - - - - - - - - - - - - - - - - - - - - - - - - gtaaaaag