Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttcatgttacagctctatttgtggtagagggaatagaagagctctgcttcgacttgtttctaaccttggatttctgttgggcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATACCGTCACTACAACGACATCAGCGAGCTGTCTCCTCACCGCCTGCAAGAGA

Basic information

species Zea mays
transcript GRMZM2G104918_T03
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G104918_T03 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os04g59040.3 (Oryza sativa), 3'ss of exon 6
gtatttcatgttacagctctatttgtggtagagggaatagaa-------gagctc---tgcttcgacttgtttctaaccttggatttctgttgggcgttgt---cagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATACCGTCACTACAACGACATCAGCGAGCTGTCTCCTCACCGCCTGCAAGAGA
|||| |  |  ||| | ||| ||||| | | |||||| |  |       | | ||      || |  |||||| |    |        | ||||   ||||   |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||| |||||||
gtatatttt-ctactgttctgtttgtagcaaagggaaaaagacctgcacgggttcactctttttgttttgttttttttttactgacgatattggattttgtgatcagGGTGAGAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATACCGTCATTACAATGACATCAGTGAGCTGTCTCCTCACCGCCTCCAAGAGA

upper sequence: GRMZM2G104918_T03 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os04g59040.2 (Oryza sativa), 3'ss of exon 5
gtatttcatgttacagctctatttgtggtagagggaatagaa-------gagctc---tgcttcgacttgtttctaaccttggatttctgttgggcgttg---tcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATACCGTCACTACAACGACATCAGCGAGCTGTCTCCTCACCGCCTGCAAGAGA
        |  ||| | ||| ||||| | | |||||| |  |       | | ||      || |  |||||| |    |        | ||||   |||   ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||| |||||||
-------tttctactgttctgtttgtagcaaagggaaaaagacctgcacgggttcactctttttgttttgttttttttttactgacgatattggattttgtgatcagGGTGAGAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATACCGTCATTACAATGACATCAGTGAGCTGTCTCCTCACCGCCTCCAAGAGA

upper sequence: GRMZM2G104918_T03 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA07G05390.1 (Glycine max), 3'ss of exon 6
gtatttcatgttacagctctatttgtggtagagggaatagaagagctctgcttcgacttgtttctaaccttggatttctgttgggcgttgtca--gGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATACCGTCACTACAACGACATCAGCGAGCTGTCTCCTCACCGCCTGCAAGAGA
|||| |  | ||   ||||| |   || || |   | |  ||    | || | | ||   |||  |   |   |    |||       || ||  ||| || |||||||| || || || |||||||||||||||||||| |||||    ||||| |  ||| |||  || ||  | ||||| |||||    ||||
gtatattctcttg--gctctttagctgataaaaaaattgaaa---ttttgttccaacc-atttaaacaataacaagcttgtccaattgtgacacagGGGGAGAAGGATGATAAAATTATTGCAGTATGTGCTGATGATCCAGAATATAAGCACTATACTGACTTCAAAGAACTTCCACCTCATCGCCTCATGGAGA

upper sequence: GRMZM2G104918_T03 (Zea mays), 3'ss of exon 6
lower sequence: AT1G01050.1 (Arabidopsis thaliana), 3'ss of exon 6
-------------gtatttcatgttacagctctatttgtggta------gagggaatagaagagctctgcttcga----cttgt-ttctaaccttggatttctgttgg-gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATACCGTCACTACAACGACATCAGCGAGCTGTCTCCTCACCGCCTGCAAGAGA
              |  |  |||  |   |||| ||| |  |            |||     || || | ||  |    |||||  || || |||| |||| ||  |  |   | | |||||||||| ||||||||||| || ||||| |||| |||||||||||||||    |||||||  |||||||  || ||  |||||||||| ||    || |
gtaaaacctaaacttgatcaatgaaaagactctgttttttttttctcttactctaatcctttaggtcagtttaaatggtcttgtactccaatcttgtatttttggcgctgtaattttagGGTGAAAAAGATGACAAGATCATTGCAGTGTGTGTTGATGATCCTGAATATAAGCACTACACTGACATCAAAGAACTTCCTCCTCACCGTCTCTCTGAAA

upper sequence: GRMZM2G104918_T03 (Zea mays), 3'ss of exon 6
lower sequence: AT4G01480.1 (Arabidopsis thaliana), 3'ss of exon 6
---gtatttcatgttacagctctatttgtggtagagggaatagaagagctctgcttcgacttgtttctaa--ccttggatttctgttgggcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATACCGTCACTACAACGACATCAGCGAGCTGTCTCCTCACCGCCTGCAAGAGA
     ||   | | |  || |   ||  || |     |      |    | ||   | | ||||  ||||  | ||||  || || | |   |    |||||||||| ||||||||||| || ||||| |||| |||||||||||| ||    |||  ||   ||||||  || ||  ||||||| || ||    || |
gtaacatcctaagctttagttt--ttcatgtttccttgtgcttcaagtttgtgtaacca-ttgtagctaattctttggggttttggttgaaataa--agGGTGAAAAAGATGACAAGATCATTGCAGTTTGTGTTGATGATCCTGAGTATAAGCACATCACTAACATCAATGAACTTCCTCCTCATCGTCTTTCTGAAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|62550351|gb|DN830771.1|DN830771
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: gi|5847381|gb|AW000460.1|AW000460
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGACGATCCTGAATAC
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: gi|211093920|gb|FK999173.1|FK999173
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGACGATCCTGAATAC
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: gi|19436367|gb|BM952777.1|BM952777
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACA
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACA
EST: gi|32919721|gb|CF024533.1|CF024533
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGACGATCCTGAATAC
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: gi|211089012|gb|FK999151.1|FK999151
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATA
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATA
EST: gi|37386984|gb|CF630684.1|CF630684
EST:     TGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGACGATCCTGAATAC
genomic: TGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: gi|19057667|gb|BM736334.1|BM736334
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGC
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGC
EST: gi|211096405|gb|FK999195.1|FK999195
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATTGACA
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGAT-GACA
EST: gi|37379871|gb|CF626703.1|CF626703
EST:     CCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGACGATCCTGAATAC
genomic: CCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: gi|19057482|gb|BM736149.1|BM736149
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGC
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGC
EST: gi|211101358|gb|FK999222.1|FK999222
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGACGATCCTGAATAC
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: gi|19436825|gb|BM953235.1|BM953235
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGC
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGC
EST: gi|6021306|gb|AW066234.1|AW066234
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGACGATCCTGAATAC
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: gi|67017181|gb|CO445930.1|CO445930
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: gi|211091454|gb|FK999157.1|FK999157
EST:     GTTCGTTCCTGARAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAA-GGATGACAAGATAATAGCAGTATGTGCTGACGATCCTGAATAC
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: gi|211096399|gb|FK999189.1|FK999189
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGA
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGA
EST: gi|211091456|gb|FK999159.1|FK999159
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAA-GGATGACAAGATAATAGCAGTATGTGCTGACGATCCTGAATA
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATA
EST: gi|32937680|gb|CF042499.1|CF042499
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTATGTACTGACGATCCTGAATAC
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: gi|89106071|gb|DY576288.1|DY576288
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: gi|211096403|gb|FK999193.1|FK999193
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGACGATCCTGAATAC
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: gi|60393934|gb|DN226804.1|DN226804
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: gi|19436366|gb|BM952776.1|BM952776
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGC
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGC
EST: gi|67033584|gb|CO462333.1|CO462333
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: gi|113703472|gb|EE680976.1|EE680976
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGACGATCCTGAATAC
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: gi|211098881|gb|FK999210.1|FK999210
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTATGTGC
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGC
EST: gi|211098878|gb|FK999207.1|FK999207
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAANAGGATGACAAGATAATAGCAGTATGTGCTGACGATCCTGAATAC
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: gi|67021936|gb|CO450685.1|CO450685
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: gi|211096404|gb|FK999194.1|FK999194
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACA-GATAATAGCAGTATGTGCTGACGATCCTGAAT
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAAT
EST: gi|211089006|gb|FK999145.1|FK999145
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: gi|211101349|gb|FK999213.1|FK999213
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         G-TGAAAAGGATGACAAGATAATAGCAGTATGTGCTGACGATCTTGAATAC
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: gi|211103818|gb|FK999227.1|FK999227
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGAT
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGAT
EST: gi|7031378|gb|AW461161.1|AW461161
EST:     GCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGACGATCCTGAATAC
genomic: GCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: gi|211098872|gb|FK999201.1|FK999201
EST:     TTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCCAG                         GTTGAAA-GGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGGATA
genomic: TTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACC-AGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATA
EST: gi|19436824|gb|BM953234.1|BM953234
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGC
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGC
EST: gi|211096392|gb|FK999182.1|FK999182
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGACGATCCTGAATAC
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: gi|15005394|gb|BI325461.1|BI325461
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGACGATCCTGAATAC
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: gi|213173898|gb|FM195700.1|FM195700
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGACGATCCTGAATAC
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: gi|211101356|gb|FK999220.1|FK999220
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: gi|18177661|gb|BM378871.1|BM378871
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGACGATCCTGAATAC
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: gi|89106562|gb|DY576779.1|DY576779
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAG
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAG
EST: gi|211089011|gb|FK999150.1|FK999150
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCC
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCC
EST: gi|74034986|gb|DT535476.1|DT535476
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: gi|211098880|gb|FK999209.1|FK999209
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCC-ATGATTGACCAG                         GGTGAAAAGGATGACAAGATA-TWGCAGTATGTGCTGATGATC-TGAAT
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAAT
EST: gi|211101357|gb|FK999221.1|FK999221
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACA-GATAATAGCAGTATGTGCTGACGATCCTGAATAC
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: gi|19057483|gb|BM736150.1|BM736150
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGC
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGC
EST: gi|211093923|gb|FK999176.1|FK999176
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGACGATCCTGAATAC
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: gi|211103821|gb|FK999230.1|FK999230
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAA-GGATGACAAGATAATAGCAGTAT
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTAT
EST: gi|211091458|gb|FK999161.1|FK999161
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGAT
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGAT
EST: gi|51592318|gb|CV071464.1|CV071464
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: gi|211091449|gb|FK999152.1|FK999152
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGACGATCCTGAATAC
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: gi|32912207|gb|CF017019.1|CF017019
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGACGATCCTGAATAC
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: gi|211089007|gb|FK999146.1|FK999146
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GATGAAAAGGATGACAAGATAATAGCAGTATGTGC
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGC
EST: gi|211096395|gb|FK999185.1|FK999185
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGAT
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGAT
EST: gi|71439485|gb|DR820535.1|DR820535
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: gi|60336871|gb|DN203844.1|DN203844
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGACGATCCTGAATAC
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: gi|60359049|gb|DN226022.1|DN226022
EST:     TTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
genomic: TTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: gi|211091453|gb|FK999156.1|FK999156
EST:     GCTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: gi|211101362|gb|FK999226.1|FK999226
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGACGATCCTGAATAC
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: gi|31351589|gb|CD435946.1|CD435946
EST:     GGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGACGATCCTGAATAC
genomic: GGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: gi|31350632|gb|CD434989.1|CD434989
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGACGATCCTGAATAC
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: gi|32912997|gb|CF017809.1|CF017809
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGACGATCCTGAATAC
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: gi|67023516|gb|CO452265.1|CO452265
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCGTGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: gi|16916399|gb|BM072828.1|BM072828
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTAT-CCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC
EST: gi|24765735|gb|CA400894.1|CA400894
EST:     GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAG                         GGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGACGATCCTGAATAC
genomic: GTTCGTTCCTGAGAGCTAGAGCAATTGGCCTTATGCCCATGATTGACCAGgtatttcatg ... gcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaagagctctgcttcgacttgtttctaaccttggatttctgttgggcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATACCGTCACTACAACGACATCAGCGAGCTGTCTCCTCACCGCCTGCAAGAGA
                      ttctaac  putative branch site (score: 1)
                     tttctaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatttcatgttacagctctatttgtggtagagggaatagaagagctctgcttcgacttgtttctaaccttggatttctgttgggcgttgtcagGGTGAAAAGGATGACAAGATAATAGCAGTATGTGCTGATGATCCTGAATACCGTCACTACAACGACATCAGCGAGCTGTCTCCTCACCGCCTGCAAGAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA