1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...caaaaatacgcagatctcctgcgtattcaagaaaaaaaaggtggtggtatgtaccttccattaggggatgcctcttgacaacttataagtgtctctgcagGATGGCTCCCTCCAGAATTCATGTAACATGTGCATTAGTTTATGGGCCTTCACCAACAGGAAGGATCCACCAAGGAGTTTGTTCAACATGGATGAAG
species | Zea mays |
transcript | GRMZM2G104294_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATAGCTCCTCGTCTGCAACCACGATACTACTCAATTTCATCATCTCCAAA GATGGCTCCCTCCAGAATTCATGTAACATGTGCATTAGTTTATGGGCCTTCEST: gi|32928790|gb|CF033602.1|CF033602
genomic: ATAGCTCCTCGTCTGCAACCACGATACTACTCAATTTCATCATCTCCAAAgtaagttttt ... gtctctgcagGATGGCTCCCTCCAGAATTCATGTAACATGTGCATTAGTTTATGGGCCTTC
EST: CGATACTACTCAATTTCATCATCTCCAAA GATGGCTCCCTCCAGAATTCATGTAACATGTGCATTAGTTTATGGGCCTTCEST: gi|194716812|gb|FK933971.1|FK933971
genomic: CGATACTACTCAATTTCATCATCTCCAAAgtaagttttt ... gtctctgcagGATGGCTCCCTCCAGAATTCATGTAACATGTGCATTAGTTTATGGGCCTTC
EST: ATAGCTCCTCGTCTGCAACCACGATACTACTCAATTTCATCATCTCCAAA GATGGCTCCCTCCAGAATTCATGTAACATGTGCATTAGTTTATGGGCCTTCEST: gi|32921358|gb|CF026170.1|CF026170
genomic: ATAGCTCCTCGTCTGCAACCACGATACTACTCAATTTCATCATCTCCAAAgtaagttttt ... gtctctgcagGATGGCTCCCTCCAGAATTCATGTAACATGTGCATTAGTTTATGGGCCTTC
EST: ATAGCTCCTCGTCTGCAACCACGATACTACTCAATTTCATCATCTCCAAA GATGGCTCCCTCCAGAATTCATGTAACATGTGCATTAGTTTATGGGCCTTCEST: gi|32832538|gb|CD972216.1|CD972216
genomic: ATAGCTCCTCGTCTGCAACCACGATACTACTCAATTTCATCATCTCCAAAgtaagttttt ... gtctctgcagGATGGCTCCCTCCAGAATTCATGTAACATGTGCATTAGTTTATGGGCCTTC
EST: ATAGCTCCTCGTCTGCAACCACGATACTACTCAATTTCATCATCTCCAAA GATGGCTCCCTCCAGAATTCATGTAACATGTGCATTAGTTTATGGGCCTTCEST: gi|32929828|gb|CF034640.1|CF034640
genomic: ATAGCTCCTCGTCTGCAACCACGATACTACTCAATTTCATCATCTCCAAAgtaagttttt ... gtctctgcagGATGGCTCCCTCCAGAATTCATGTAACATGTGCATTAGTTTATGGGCCTTC
EST: ATAGCTCCTCGTCTGCAACCACGATACTACTCAATTTCATCATCTCCAAA GATGGCTCCCTCCAGAATTCATGTAACATGTGCATTAGTTTATGGGCCTTCEST: gi|67024128|gb|CO452877.1|CO452877
genomic: ATAGCTCCTCGTCTGCAACCACGATACTACTCAATTTCATCATCTCCAAAgtaagttttt ... gtctctgcagGATGGCTCCCTCCAGAATTCATGTAACATGTGCATTAGTTTATGGGCCTTC
EST: ATAGCTCCTCGTCTGCAACCCCGATACTACTCAATTTCATCATCTCCAAA GATGGCTCCCTCCAGAATTCATGTAACATGTGCATTAGTTTATGGGCCTTCEST: gi|22819046|gb|BU499136.1|BU499136
genomic: ATAGCTCCTCGTCTGCAACCACGATACTACTCAATTTCATCATCTCCAAAgtaagttttt ... gtctctgcagGATGGCTCCCTCCAGAATTCATGTAACATGTGCATTAGTTTATGGGCCTTC
EST: ATAGCTCCTCGTCTGCAACCACGATACTACTCAATTTCATCATCTCCAAA GATGGCTCCCTCCAGAAATCATEST: gi|32921381|gb|CF026193.1|CF026193
genomic: ATAGCTCCTCGTCTGCAACCACGATACTACTCAATTTCATCATCTCCAAAgtaagttttt ... gtctctgcagGATGGCTCCCTCCAGAATTCAT
EST: ATAGCTCCTCGTCTGCAACCACGATACTACTCAATTTCATCATCTCCAAA GATGGCTCCCTCCAGAATTCATGTAACATGTGCATTAGTTTATGGGCCTTCEST: gi|211465905|gb|FL134197.1|FL134197
genomic: ATAGCTCCTCGTCTGCAACCACGATACTACTCAATTTCATCATCTCCAAAgtaagttttt ... gtctctgcagGATGGCTCCCTCCAGAATTCATGTAACATGTGCATTAGTTTATGGGCCTTC
EST: ATAGCTCCTCGTCTGCAACCACGATACTACTCAATTTCATCATCTCCAAA GATGGCTCCCTCCAGAATTCATGTAACATGTGCATTAGTTTATGGGCCTTCEST: gi|32835489|gb|CD975167.1|CD975167
genomic: ATAGCTCCTCGTCTGCAACCACGATACTACTCAATTTCATCATCTCCAAAgtaagttttt ... gtctctgcagGATGGCTCCCTCCAGAATTCATGTAACATGTGCATTAGTTTATGGGCCTTC
EST: GATACTACTCAATTTCATCATCTCCAAA GATGGCTCCCTCCAGAATTCATGTAACATGTGCATTAGTTTATGGGCCTTCEST: gi|32928791|gb|CF033603.1|CF033603
genomic: GATACTACTCAATTTCATCATCTCCAAAgtaagttttt ... gtctctgcagGATGGCTCCCTCCAGAATTCATGTAACATGTGCATTAGTTTATGGGCCTTC
EST: ATAGCTCCTCGTCTGCAACCACGATACTACTCAATTTCATCATCTCCAAA GATGGCTCCCTCCAGAATTCATGTAACATGTGCATTAGTTTATGGGCCTTCEST: gi|32920698|gb|CF025510.1|CF025510
genomic: ATAGCTCCTCGTCTGCAACCACGATACTACTCAATTTCATCATCTCCAAAgtaagttttt ... gtctctgcagGATGGCTCCCTCCAGAATTCATGTAACATGTGCATTAGTTTATGGGCCTTC
EST: ATAGCTCCTCGTCTGCAACCACGATACTACTCAATTTCATCATCTCCAAA GATGGCTCCCTCCAGAATTCATGTAACATGTGCATTAGTTTATGGGCCTTC
genomic: ATAGCTCCTCGTCTGCAACCACGATACTACTCAATTTCATCATCTCCAAAgtaagttttt ... gtctctgcagGATGGCTCCCTCCAGAATTCATGTAACATGTGCATTAGTTTATGGGCCTTC
ggtatgtaccttccattaggggatgcctcttgacaacttataagtgtctctgcagGATGGCTCCCTCCAGAATTCATGTAACATGTGCATTAGTTTATGGGCCTTCACCAACAGGAAGGATCCACCAAGGAGTTTGTTCAACATGGATGAAG
tcttgac putative branch site (score: 1272)
tgtctct putative PPT
aacttataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaaaatacgcagatctcctgcgtattcaagaaaaaaaaggtggtggtatgtaccttccattaggggatgcctcttgacaacttataagtgtctctgcagGATGGCTCCCTCCAGAATTCATGTAACATGTGCATTAGTTTATGGGCCTTCACCAACAGGAAGGATCCACCAAGGAGTTTGTTCAACATGGATGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
-aaaaata
- - - - - - - -ctcctgc
- - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - -ggtggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggatgcc