1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaatcgtcaatggcaccttgacaaaacattttcttatcctccaggttcctttattcatgtttactaatcattcctgttttggctttaagGTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAATTGGAAGAAGAA
species | Zea mays |
transcript | GRMZM2G104166_T03 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTG GTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAAEST: gi|67017186|gb|CO445935.1|CO445935
genomic: CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTGgtaatcgtca ... tggctttaagGTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAA
EST: CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTG GTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAAEST: gi|78543553|gb|DV621051.1|DV621051
genomic: CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTGgtaatcgtca ... tggctttaagGTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAA
EST: CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTG GTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAAEST: gi|20301506|gb|BQ164449.1|BQ164449
genomic: CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTGgtaatcgtca ... tggctttaagGTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAA
EST: CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTG GTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTCGACAAAEST: gi|6095746|gb|AW120413.1|AW120413
genomic: CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTGgtaatcgtca ... tggctttaagGTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAA
EST: CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTG GTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGAATACTTGACAAEST: gi|211163116|gb|FL067005.1|FL067005
genomic: CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTGgtaatcgtca ... tggctttaagGTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAG-ATACTTGACAA
EST: CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTG GTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAAEST: gi|211163114|gb|FL067003.1|FL067003
genomic: CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTGgtaatcgtca ... tggctttaagGTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAA
EST: CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTG GTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAAEST: gi|5895761|gb|AW037007.1|AW037007
genomic: CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTGgtaatcgtca ... tggctttaagGTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAA
EST: CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTG GTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAAEST: gi|26456480|gb|CA828063.1|CA828063
genomic: CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTGgtaatcgtca ... tggctttaagGTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAA
EST: CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTG GTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAAEST: gi|91056506|gb|EB166924.1|EB166924
genomic: CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTGgtaatcgtca ... tggctttaagGTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAA
EST: CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTG GTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAAEST: gi|5847057|gb|AW000136.1|AW000136
genomic: CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTGgtaatcgtca ... tggctttaagGTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAA
EST: CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTG GTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAAEST: gi|76283089|gb|DV022657.1|DV022657
genomic: CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTGgtaatcgtca ... tggctttaagGTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAA
EST: CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTG GTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAAEST: gi|148996412|gb|EE035707.2|EE035707
genomic: CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTGgtaatcgtca ... tggctttaagGTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAA
EST: CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTG GTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAA
genomic: CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTGgtaatcgtca ... tggctttaagGTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAA
tatcctccaggttcctttattcatgtttactaatcattcctgttttggctttaagGTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAATTGGAAGAAGAA
tactaat putative branch site (score: 133)
ttcctgtttt putative PPT
tttattcatgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatcgtcaatggcaccttgacaaaacattttcttatcctccaggttcctttattcatgtttactaatcattcctgttttggctttaagGTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAATTGGAAGAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG