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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgcaattcttactgtatcaagctgatcttctaatactttaaaatatggttaagaattacttgcaagctaagttgatgagttttcctctttaaattgcagGCACTGGATACATTTAATACAGCAGTAGTCTCACCAATATATTACGTGATGTTTACATCACTAACAATTATAGCTAGTGTGATAATGTTCAAG

Basic information

species Zea mays
transcript GRMZM2G104147_T03
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G104147_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os11g09140.2 (Oryza sativa), 3'ss of exon 6
ttgcaattcttactgtatcaagctgatcttctaatactttaaaatatggttaagaattacttgcaagctaagttgatgagttttcctctttaaattgcagGCACTGGATACATTTAATACAGCAGTAGTCTCACCAATATATTACGTGATGTTTACATCACTAACAATTATAGCTAGTGTGATAATGTTCAAG
    ||    ||   |||  ||||    || |  ||   ||  | ||        ||||| |  | || |   | ||   |||  |||| | | ||||||||| |||| || |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||| |||
acagaacatgtagcttattgagctaccattattgtaacatatcacataagggcttattacattaacgcaatagtaattcttttatctctgtgacttgcagGCATTGGACACCTTTAATACAGCAGTTGTCTCACCAATATATTACGTGATGTTTACTTCACTAACAATTTTAGCCAGTGTGATAATGTTTAAG

upper sequence: GRMZM2G104147_T02 (Zea mays), 3'ss of exon 6
lower sequence: AT1G71900.1 (Arabidopsis thaliana), 3'ss of exon 6
-----ttgcaattcttactgtatcaagctgatc--ttctaatactttaaaata--tggttaagaat---tacttgcaagctaagttgatgagtttt---cctctttaaattgcagGCACTGGATACATTTAATACAGCAGTAGTCTCACCAATATATTACGTGATGTTTACATCACTAACAATTATAGCTAGTGTGATAATGTTCAAG
     |   ||||       | ||| | | |||  ||  || ||||| |  |   |  |||    |   |  |||  |  |||     ||  ||||       ||| | |||||||| || |||||||| ||||||||  |||| || || ||||| ||||||||||| ||||| ||||| ||| | |||||||| || ||||| |||
gtaactattaattaagtgattttcaggataatcgattggaagactttgacgtgggtaattagatgtctatctttgttacttaaagaattgcattttgtattgttttcacttgcagGCTCTTGATACATTCAATACAGCTATAGTATCTCCTATATACTACGTGATGTTCACATCTCTAACTATTTTGGCTAGTGTCATCATGTTTAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggttaagaattacttgcaagctaagttgatgagttttcctctttaaattgcagGCACTGGATACATTTAATACAGCAGTAGTCTCACCAATATATTACGTGATGTTTACATCACTAACAATTATAGCTAGTGTGATAATGTTCAAG
                         agttgat  putative branch site (score: 5)
                                   ttttcctcttt  putative PPT
                                         tctttaaatt  TA-rich tract