Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aacataggcttggccatacataacaatatgtttttaccctagtttcatgttgaacttgtttgattaaatcgcctttttcctgataagtcaatggcttcagGGTTTTATTTGAGTTGATATGGAGAGACTACTTCAGATTTCTATCAGCAAAATATGGAAACGCCATATTTCACCTGG

Basic information

species Zea mays
transcript GRMZM2G103897_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G103897_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os06g45100.1 (Oryza sativa), 3'ss of exon 6
-----aacataggcttggccatacataacaatatgtttttaccctagtttcatgttgaacttgtttgattaaatcgcctttttcctgataagtcaatggcttcagGGTTTTATTTGAGTTGATATGGAGAGACTACTTCAGATTTCTATCAGCAAAATATGGAAACGCCATATTTCACCTGG
      | |||    | |        ||  |   ||||  | | |  ||  | ||  |  | ||   | | ||   |   |||| ||||| | |||||  |||||||||||||||||||||||||||||||| |||||| | ||  |||||||||||||||| ||| |||| |||||||| |
agtgtgaaatatttatagattattgcaattaagggtttccaacttccttagaagtcaa--tggtgaaactgaaatac---tttcttgatatgacaatgttttcagGGTTTTATTTGAGTTGATATGGAGAGATTACTTCCGGTTCATATCAGCAAAATATGGGAACTCCATTTTTCACCTAG

upper sequence: GRMZM2G103897_T01 (Zea mays), 3'ss of exon 6
lower sequence: Vv04s0008g02670.t01 (Vitis vinifera), 3'ss of exon 7
---------------------------------------------------aacataggcttgg---ccatacataacaatatgtttttaccctagtttcatgttgaacttgtttgattaaatcgcctttttcctgataagt----caatggcttcagGGTTTTATTTGAGTTGATATGGAGAGACTACTTCAGATTTCTATCAGCAAAATATGGAAACGCCATATTTCACCTGG
                                                   | |||   |||     |  |    | |   ||  |    | |     |   ||| |||||   |  | |    |  |||||| | | | ||      |||| |||||||| || ||||| |||||||||||||| |||||||| || || ||||  |||||  ||||  |  | ||||| || |
gtatgactcgctcttcatcatctcatatccccttttggtgttttgatttttaccatgatctttagatctgtgttgagctggatactaactctcagcagtttggtttaacttcagtagtca--ctgtttttttcattaaatgtgttttcatggtttcagGGTGTTGTTTGAATTGATATGGAGAGATTACTTCAGGTTCCTGTCAGTTAAATACAGAAATTCTCTTTTTCATCTAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76283830|gb|DV023398.1|DV023398
EST:     GCAAATGATTCAACATATTG                         GGTTTTATTTGAGTTGATATGGAGAGACTACTTCAGATTTCTATCAGCAAA
genomic: GCAAATGATTCAACATATTGgttagtgtgc ... atggcttcagGGTTTTATTTGAGTTGATATGGAGAGACTACTTCAGATTTCTATCAGCAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgttgaacttgtttgattaaatcgcctttttcctgataagtcaatggcttcagGGTTTTATTTGAGTTGATATGGAGAGACTACTTCAGATTTCTATCAGCAAAATATGGAAACGCCATATTTCACCTGG
                                tcctgat  putative branch site (score: 3)
          ttgtttgattaaat  TA-rich tract