1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgagtgacatttattggtataaaaggagttttagttgctagaactgctttgtcatgaatagatccatattagatgtaacctttgggcttacttgatgcagGTCAAGTACTGGAAGTGTCCATGGCCAAACCATTGGCAGATAAGAAACCTGATCATTCACACAGGCCTGGAGGAGGCCCTAATTATCCCCTTCCTCCCTA
species | Zea mays |
transcript | GRMZM2G103430_T04 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATCAAGTGCATTGAAGGCAGTTAAAGGAAGTGAAAAATATGAAATCGATG GTCAAGTACTGGAAGTGTCCATGGCCAAACCATTGGCAGATAAGAAACCTGEST: gi|211350822|gb|FL045986.1|FL045986
genomic: ATCAAGTGCATTGAAGGCAGTTAAAGGAAGTGAAAAATATGAAATCGATGgtaaacttct ... cttgatgcagGTCAAGTACTGGAAGTGTCCATGGCCAAACCATTGGCAGATAAGAAACCTG
EST: ATCAAGTGCATTGAAGGCAGTTAAAGGAAGTGAAAAATATGAAATCGATG GTCAAGTACTGGAAGTGTCCATGGCCAAACCATTGGCAGATAAGAAACCTGEST: gi|6952509|gb|AW424577.1|AW424577
genomic: ATCAAGTGCATTGAAGGCAGTTAAAGGAAGTGAAAAATATGAAATCGATGgtaaacttct ... cttgatgcagGTCAAGTACTGGAAGTGTCCATGGCCAAACCATTGGCAGATAAGAAACCTG
EST: ATCAAGTGCATTGAAGGCAGTTAAAGGAAGTGAAAAATATGAAATCGATG GTCAAGTACTGGAAGTGTCCATGGCCAAACCATTGGCAGATAAGAAACCTGEST: gi|148950939|gb|EC896574.2|EC896574
genomic: ATCAAGTGCATTGAAGGCAGTTAAAGGAAGTGAAAAATATGAAATCGATGgtaaacttct ... cttgatgcagGTCAAGTACTGGAAGTGTCCATGGCCAAACCATTGGCAGATAAGAAACCTG
EST: ATCAAGTGCATTGAAGGCAGTTAAAGGAAGTGAAAAATATGAAATCGATG GTCAAGTACTGGAAGTGTCCATGGCCAAACCATTGGCAGATAAGAAACCTGEST: gi|40336436|gb|CK370506.1|CK370506
genomic: ATCAAGTGCATTGAAGGCAGTTAAAGGAAGTGAAAAATATGAAATCGATGgtaaacttct ... cttgatgcagGTCAAGTACTGGAAGTGTCCATGGCCAAACCATTGGCAGATAAGAAACCTG
EST: ATCAAGTGCATTGAAGGCAGTTAAAGGAAGTGAAAAATATGAAATCGATG GTCAAGTACTGGAAGTGTCCATGGCCAAACCATTGGCAGATAAGAAACCTGEST: gi|20811268|gb|BQ295746.1|BQ295746
genomic: ATCAAGTGCATTGAAGGCAGTTAAAGGAAGTGAAAAATATGAAATCGATGgtaaacttct ... cttgatgcagGTCAAGTACTGGAAGTGTCCATGGCCAAACCATTGGCAGATAAGAAACCTG
EST: ATCAAGTGCATTGAAGGCAGTTAAAGGAAGTGAAAAATATGAAATCGATG GTCAAGTACTGGAAGTGTCCATGGCCAAACCATTGGCAGATAAGAAACCTGEST: gi|149072510|gb|EE160790.2|EE160790
genomic: ATCAAGTGCATTGAAGGCAGTTAAAGGAAGTGAAAAATATGAAATCGATGgtaaacttct ... cttgatgcagGTCAAGTACTGGAAGTGTCCATGGCCAAACCATTGGCAGATAAGAAACCTG
EST: ATCAAGTGCATTGAAGGCAGTTAAAGGAAGTGAAAAATATGAAATCGATG GTCAAGTACTGGAAGTGTCCATGGCCAAACCATTGGCAGATAAGAAACCTGEST: gi|37393328|gb|CF633926.1|CF633926
genomic: ATCAAGTGCATTGAAGGCAGTTAAAGGAAGTGAAAAATATGAAATCGATGgtaaacttct ... cttgatgcagGTCAAGTACTGGAAGTGTCCATGGCCAAACCATTGGCAGATAAGAAACCTG
EST: ATCAAGTGCATTGAAGGCAGTTAAAGGAAGTGAAAAATATGAAATCGATG GTCAAGTACTGGAAGTGTCCATGGCCAAACCATTGGCAGATAAGAAACCTGEST: gi|32808288|gb|CD960522.1|CD960522
genomic: ATCAAGTGCATTGAAGGCAGTTAAAGGAAGTGAAAAATATGAAATCGATGgtaaacttct ... cttgatgcagGTCAAGTACTGGAAGTGTCCATGGCCAAACCATTGGCAGATAAGAAACCTG
EST: TAAAGGAAGTGAAAAATATGAAATCGATG GTCAAGTACTGGAAGTGTCCATGGCCAAACCATTGGCAGATAAGAAACCTGEST: gi|78081443|gb|DV509855.1|DV509855
genomic: TAAAGGAAGTGAAAAATATGAAATCGATGgtaaacttct ... cttgatgcagGTCAAGTACTGGAAGTGTCCATGGCCAAACCATTGGCAGATAAGAAACCTG
EST: TTGAAGGCAG-TAAAGGAAAGTGAAAAATATGAAATCGATG GTCAAGTACTGGAAGTGTCCATGGCCAAACCATTGGCAGATAAGAAACCTGEST: gi|148974507|gb|EE025291.2|EE025291
genomic: TTGAAGGCAGTTAAAGG-AAGTGAAAAATATGAAATCGATGgtaaacttct ... cttgatgcagGTCAAGTACTGGAAGTGTCCATGGCCAAACCATTGGCAGATAAGAAACCTG
EST: ATCAAGTGCATTGAAGGCAGTTAAAGGAAGTGAAAAATATGAAATCGATG GTCAAGTACTGGAAGTGTCCATGGCCAAACCATTGGCAGATAAGAAACCTGEST: gi|211353220|gb|FL045989.1|FL045989
genomic: ATCAAGTGCATTGAAGGCAGTTAAAGGAAGTGAAAAATATGAAATCGATGgtaaacttct ... cttgatgcagGTCAAGTACTGGAAGTGTCCATGGCCAAACCATTGGCAGATAAGAAACCTG
EST: ATCAAGTGCATTGAAGGCAGTTAAAGGAAGTGAAAAATATGAAATCGATG GTCAAGTACTGGAAGTGTCCATGGCCAAACCATTGGCAGATAAGAAACCTGEST: gi|110934046|gb|EE154272.1|EE154272
genomic: ATCAAGTGCATTGAAGGCAGTTAAAGGAAGTGAAAAATATGAAATCGATGgtaaacttct ... cttgatgcagGTCAAGTACTGGAAGTGTCCATGGCCAAACCATTGGCAGATAAGAAACCTG
EST: AAGTGCATGTGAAGGCAGTTTAAAGGAAAGTGAAAAATAGGAAATGGATG GTCAAGTACTGGAAGGT-TCCATGGCCAAACCATTGGCAGATAAGAAACCTEST: gi|71332331|gb|DR803106.1|DR803106
genomic: AAGTGCAT-TGAAGGCAG-TTAAAGG-AAGTGAAAAATATGAAATCGATGgtaaacttct ... cttgatgcagGTCAAGTACTGGAA-GTGTCCATGGCCAAACCATTGGCAGATAAGAAACCT
EST: ATCAAGTGCATTGAAGGCAGTTAAAGGAAGTGAAAAATATGAAATCGATG GTCAAGTACTGGAAGTGTCCATGGCCAAACCATTGGCAGATAAGAAACCTGEST: gi|60340674|gb|DN207647.1|DN207647
genomic: ATCAAGTGCATTGAAGGCAGTTAAAGGAAGTGAAAAATATGAAATCGATGgtaaacttct ... cttgatgcagGTCAAGTACTGGAAGTGTCCATGGCCAAACCATTGGCAGATAAGAAACCTG
EST: ATCAAGTGCATTGAAGGCAGTTAAAGGAAGTGAAAAATATGAAATCGATG GTCAAGTACTGGAAGTGTCCATGGCCAAACCATTGGCAGATAAGAAACCTGEST: gi|149034770|gb|EE155070.2|EE155070
genomic: ATCAAGTGCATTGAAGGCAGTTAAAGGAAGTGAAAAATATGAAATCGATGgtaaacttct ... cttgatgcagGTCAAGTACTGGAAGTGTCCATGGCCAAACCATTGGCAGATAAGAAACCTG
EST: GGCAGTTAAAGGAAGTGAAAAATATGAAATCGATG GTCAAGTACTGGAAGTGTCCATGGCCAAACCATTGGCAGATAAGAAACCTGEST: gi|211350823|gb|FL045987.1|FL045987
genomic: GGCAGTTAAAGGAAGTGAAAAATATGAAATCGATGgtaaacttct ... cttgatgcagGTCAAGTACTGGAAGTGTCCATGGCCAAACCATTGGCAGATAAGAAACCTG
EST: ATCAAGTGCATTGAAGGCAGTTAAAGGAAGTGAAAAATATGAAATCGATG GTCAAGTACTGGAAGTGTCCATGGCCAAACCATTGGCAGATAAGAAACCTGEST: gi|149096254|gb|EE181962.2|EE181962
genomic: ATCAAGTGCATTGAAGGCAGTTAAAGGAAGTGAAAAATATGAAATCGATGgtaaacttct ... cttgatgcagGTCAAGTACTGGAAGTGTCCATGGCCAAACCATTGGCAGATAAGAAACCTG
EST: ATCAAGTGCATTGAAGGCAGTTAAAGGAAGTGAAAAATATGAAATCGATG GTCAAGTACTGGAAGTGTCCATGGCCAAACCATTGGCAGATAAGAAACCTGEST: gi|148930063|gb|EE285990.2|EE285990
genomic: ATCAAGTGCATTGAAGGCAGTTAAAGGAAGTGAAAAATATGAAATCGATGgtaaacttct ... cttgatgcagGTCAAGTACTGGAAGTGTCCATGGCCAAACCATTGGCAGATAAGAAACCTG
EST: ATCAAGTGCATTGAAGGCAGTTAAAGGAAGTGAAAAATATGAAATCGATG GTCAAGTACTGGAAGTGTCCATGGCCAAACCATTGGCAGATAAGAAACCTGEST: gi|211353219|gb|FL045988.1|FL045988
genomic: ATCAAGTGCATTGAAGGCAGTTAAAGGAAGTGAAAAATATGAAATCGATGgtaaacttct ... cttgatgcagGTCAAGTACTGGAAGTGTCCATGGCCAAACCATTGGCAGATAAGAAACCTG
EST: ATCAAGTGCATTGAAGGCAGTTAAAGGAAGTGAAAAATATGAAATCGATG GTCAAGTACTGGAAGTGTCCATGGCCAAACCATTGGCAGATAAGAAACCTGEST: gi|211078934|gb|FL257757.1|FL257757
genomic: ATCAAGTGCATTGAAGGCAGTTAAAGGAAGTGAAAAATATGAAATCGATGgtaaacttct ... cttgatgcagGTCAAGTACTGGAAGTGTCCATGGCCAAACCATTGGCAGATAAGAAACCTG
EST: ATCAAGTGCATTGAAGGCAGTTAAAGGAAGTGAAAAATATGAAATCGATG GTCAAGTACTGGAAGTGTCCATGGCCAAACCATTGGCAGATAAGAAACCTGEST: gi|74233709|gb|DT641623.1|DT641623
genomic: ATCAAGTGCATTGAAGGCAGTTAAAGGAAGTGAAAAATATGAAATCGATGgtaaacttct ... cttgatgcagGTCAAGTACTGGAAGTGTCCATGGCCAAACCATTGGCAGATAAGAAACCTG
EST: ATCAAGTGCATTGAAGGCAGTTAAAGGAAGTGAAAAATATGAAATCGATG GTCAAGTACTGGAAGTGTCCATGGCCAAACCATTGGCAGATAAGAAACCTG
genomic: ATCAAGTGCATTGAAGGCAGTTAAAGGAAGTGAAAAATATGAAATCGATGgtaaacttct ... cttgatgcagGTCAAGTACTGGAAGTGTCCATGGCCAAACCATTGGCAGATAAGAAACCTG
gctttgtcatgaatagatccatattagatgtaacctttgggcttacttgatgcagGTCAAGTACTGGAAGTGTCCATGGCCAAACCATTGGCAGATAAGAAACCTGATCATTCACACAGGCCTGGAGGAGGCCCTAATTATCCCCTTCCTCCCTA
cttactt CT-rich tract
atattagat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgagtgacatttattggtataaaaggagttttagttgctagaactgctttgtcatgaatagatccatattagatgtaacctttgggcttacttgatgcagGTCAAGTACTGGAAGTGTCCATGGCCAAACCATTGGCAGATAAGAAACCTGATCATTCACACAGGCCTGGAGGAGGCCCTAATTATCCCCTTCCTCCCTA
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