1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atcctgtttctttagagcaatctttgcttctaaatttttgtatgcagaaattgcccttctctgttgactgaggatttgaatatttgctacaattactcagGTGAAGACTATATATGTGAAGAACCTACCTGAAAATGTTTCTAAAGAGAAGATAAAGGACCTGTTTGACAAACATGGAGAGGTCACAAAAATCGTTCTGC
species | Zea mays |
transcript | GRMZM2G103430_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTTGGGCTGAACCTAAGGGTTCAACAGATGCTTCATCTGCAGCTGCTCAG GTGAAGACTATATATGTGTAGAACCTACCTGAAAATGTTTCTAAAGAGAAGEST: gi|20811268|gb|BQ295746.1|BQ295746
genomic: GTTGGGCTGAACCTAAGGGTTCAACAGATGCTTCATCTGCAGCTGCTCAGgtagacattt ... aattactcagGTGAAGACTATATATGTGAAGAACCTACCTGAAAATGTTTCTAAAGAGAAG
EST: GTTGGGCTGAACCTAAGGG-TCAACAGATGCTTCATCTGCAGCTGCTCAG GTGAAGACTATATATGTGAAGAACCTACCTGAAAATGTTTCTAAAGAGAAGEST: gi|28910015|gb|CB331214.1|CB331214
genomic: GTTGGGCTGAACCTAAGGGTTCAACAGATGCTTCATCTGCAGCTGCTCAGgtagacattt ... aattactcagGTGAAGACTATATATGTGAAGAACCTACCTGAAAATGTTTCTAAAGAGAAG
EST: GTTGGGCTGAACCTAAGGGTTCAACAGATGCTTCATCTGCAGCTGCTCAG GTGAAGACTATATATGTGAAGAACCTACCTGAAAATGTTTCTAAAGAGAAGEST: gi|37393328|gb|CF633926.1|CF633926
genomic: GTTGGGCTGAACCTAAGGGTTCAACAGATGCTTCATCTGCAGCTGCTCAGgtagacattt ... aattactcagGTGAAGACTATATATGTGAAGAACCTACCTGAAAATGTTTCTAAAGAGAAG
EST: TGCAGCTGCTCAG GTGAAGACTATATATGTGTAGAACCTACCTGAAAATGTTTCTAAAGAGAAGEST: gi|148930063|gb|EE285990.2|EE285990
genomic: TGCAGCTGCTCAGgtagacattt ... aattactcagGTGAAGACTATATATGTGAAGAACCTACCTGAAAATGTTTCTAAAGAGAAG
EST: GGTTCAACAGATGCTTCATCTGCAGCTGCTCAG GTGAGGACTATATATGTGAAGAACCTACCTGAAAATG-TTCTAAAGAGAAG
genomic: GGTTCAACAGATGCTTCATCTGCAGCTGCTCAGgtagacattt ... aattactcagGTGAAGACTATATATGTGAAGAACCTACCTGAAAATGTTTCTAAAGAGAAG
agaaattgcccttctctgttgactgaggatttgaatatttgctacaattactcagGTGAAGACTATATATGTGAAGAACCTACCTGAAAATGTTTCTAAAGAGAAGATAAAGGACCTGTTTGACAAACATGGAGAGGTCACAAAAATCGTTCTGC
tgttgac putative branch site (score: 221)
atttgaatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcctgtttctttagagcaatctttgcttctaaatttttgtatgcagaaattgcccttctctgttgactgaggatttgaatatttgctacaattactcagGTGAAGACTATATATGTGAAGAACCTACCTGAAAATGTTTCTAAAGAGAAGATAAAGGACCTGTTTGACAAACATGGAGAGGTCACAAAAATCGTTCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - tgtttct
- - - - - - - - - - - - tgcttct
- - - - - - - - - - - - - - - - - - - tgtatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgcta