1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagtatcctgctgcttattttttcatgataccttataagactagcttgggcagaattctatatttatgaatattgtttcttgtgcagGGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGCTTCCATGCATACCAACAG
species | Zea mays |
transcript | GRMZM2G103047_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCT GGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGCEST: gi|37380935|gb|CF627314.1|CF627314
genomic: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCTgtgagtatcc ... tcttgtgcagGGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGC
EST: GTTTTGCAGTCTGCT GGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTCCTGCATGCTGCEST: gi|83279029|gb|DV943037.1|DV943037
genomic: GTTTTGCAGTCTGCTgtgagtatcc ... tcttgtgcagGGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGC
EST: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCT GGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGCEST: gi|149070711|gb|EE159127.2|EE159127
genomic: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCTgtgagtatcc ... tcttgtgcagGGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGC
EST: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCT GGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGCEST: gi|71427133|gb|DR808183.1|DR808183
genomic: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCTgtgagtatcc ... tcttgtgcagGGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGC
EST: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCT GGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGCEST: gi|211046748|gb|FL449688.1|FL449688
genomic: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCTgtgagtatcc ... tcttgtgcagGGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGC
EST: TTTTGCAGTCTGCT GGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGCEST: gi|78121641|gb|DV540025.1|DV540025
genomic: TTTTGCAGTCTGCTgtgagtatcc ... tcttgtgcagGGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGC
EST: AAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCT GGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGCEST: gi|149007368|gb|EE040218.2|EE040218
genomic: AAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCTgtgagtatcc ... tcttgtgcagGGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGC
EST: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTTTGCT GGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGCEST: gi|148999233|gb|EE036153.2|EE036153
genomic: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCTgtgagtatcc ... tcttgtgcagGGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGC
EST: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCT GGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGCEST: gi|76916103|gb|DV166240.1|DV166240
genomic: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCTgtgagtatcc ... tcttgtgcagGGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGC
EST: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCT GGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGCEST: gi|111193309|gb|EE291445.1|EE291445
genomic: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCTgtgagtatcc ... tcttgtgcagGGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGC
EST: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCT GGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGCEST: gi|60357212|gb|DN224185.1|DN224185
genomic: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCTgtgagtatcc ... tcttgtgcagGGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGC
EST: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCT GGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGCEST: gi|50334493|gb|CO529619.1|CO529619
genomic: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCTgtgagtatcc ... tcttgtgcagGGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGC
EST: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCT GGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGCEST: gi|211345606|gb|FL479616.1|FL479616
genomic: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCTgtgagtatcc ... tcttgtgcagGGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGC
EST: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCT GGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGCEST: gi|91054475|gb|EB164893.1|EB164893
genomic: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCTgtgagtatcc ... tcttgtgcagGGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGC
EST: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCT GGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGCEST: gi|60349346|gb|DN216319.1|DN216319
genomic: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCTgtgagtatcc ... tcttgtgcagGGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGC
EST: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCT GGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGCEST: gi|37383666|gb|CF628857.1|CF628857
genomic: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCTgtgagtatcc ... tcttgtgcagGGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGC
EST: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCT GGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGCEST: gi|91054476|gb|EB164894.1|EB164894
genomic: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCTgtgagtatcc ... tcttgtgcagGGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGC
EST: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCT GGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGCEST: gi|83278332|gb|DV942340.1|DV942340
genomic: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCTgtgagtatcc ... tcttgtgcagGGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGC
EST: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCT GGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGCEST: gi|76018096|gb|DT945266.1|DT945266
genomic: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCTgtgagtatcc ... tcttgtgcagGGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGC
EST: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCT GGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGCEST: gi|78110414|gb|DV528826.1|DV528826
genomic: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCTgtgagtatcc ... tcttgtgcagGGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGC
EST: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCT GGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGCEST: gi|60343683|gb|DN210656.1|DN210656
genomic: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCTgtgagtatcc ... tcttgtgcagGGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGC
EST: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCT GGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGCEST: gi|101401959|gb|EB822602.1|EB822602
genomic: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCTgtgagtatcc ... tcttgtgcagGGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGC
EST: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCT GGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGCEST: gi|74235577|gb|DT643491.1|DT643491
genomic: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCTgtgagtatcc ... tcttgtgcagGGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGC
EST: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCT GGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGCEST: gi|4753301|gb|AI657206.1|AI657206
genomic: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCTgtgagtatcc ... tcttgtgcagGGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGC
EST: CTTACTTACAGAAGGNGGTAAAGTTAGTCCAACANTTTTGCAAG-CTGCT GGTTTGAACTTGAAACAGATATACACAEST: gi|211114341|gb|FL479353.1|FL479353
genomic: CTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCA-GTCTGCTgtgagtatcc ... tcttgtgcagGGTTTGAACTTGAAACAGATATACACA
EST: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCT GGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGCEST: gi|78110415|gb|DV528827.1|DV528827
genomic: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCTgtgagtatcc ... tcttgtgcagGGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGC
EST: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCT GGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGCEST: gi|71444330|gb|DR825380.1|DR825380
genomic: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCTgtgagtatcc ... tcttgtgcagGGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGC
EST: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCT GGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGGTGCATGCTGCEST: gi|37383669|gb|CF628859.1|CF628859
genomic: CCTTACTTACAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCTgtgagtatcc ... tcttgtgcagGGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGC
EST: CTTAC-TATCAGAAGGTGTTAAAGTTAGTCCAGCAGTTTAGCAGTCTGCT GGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGC
genomic: CTTACTTA-CAGAAGGTGTTAAAGTTAGTCCAGCAGTTTTGCAGTCTGCTgtgagtatcc ... tcttgtgcagGGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGC
ttataagactagcttgggcagaattctatatttatgaatattgtttcttgtgcagGGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGCTTCCATGCATACCAACAG
ttgtttctt CT-rich tract
aattctatatttatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtatcctgctgcttattttttcatgataccttataagactagcttgggcagaattctatatttatgaatattgtttcttgtgcagGGTTTGAACTTGAAACAGATATACACAAGGTCATTGATTGCTGCATGCTGCTTCCATGCATACCAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT