1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgtgcaactaacatacacccttttcttttctttttttaaccaacaagcagaatccagcaatttcttagagaacacggaagacttcacaaatccataaaagggaagaaaagaataatagacttcttcagctctcccatgacggattttaaaggagccattttcttgtagGTTGTAGCACAAACTGTTGAAGTTGGAGCTCAGACTGCTGCAACTCTGTCACAACAA
species | Zea mays |
transcript | GRMZM2G102903_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAAGGAAACAAATGGACCAAACTGACCAAGCCATTGAGCGCTCAAAGATG GNTGTAGCACAAACTGTTGAAGTTGGAGCTCAGACTGCTGCAACTCTGTCAEST: gi|78023758|gb|DV492145.1|DV492145
genomic: GAAGGAAACAAATGGACCAAACTGACCAAGCCATTGAGCGCTCAAAGATGgtgtgcaact ... tttcttgtagGTTGTAGCACAAACTGTTGAAGTTGGAGCTCAGACTGCTGCAACTCTGTCA
EST: GAAGGAAACAAATGGACCAAACTGACCAAGCCATTGAGCGCTCAAAGATG GTTGTAGCACAAACTGTTGAAGTTGGAGCTCAGACTGCTGCAACTCTGTCAEST: gi|22133523|gb|BQ833759.1|BQ833759
genomic: GAAGGAAACAAATGGACCAAACTGACCAAGCCATTGAGCGCTCAAAGATGgtgtgcaact ... tttcttgtagGTTGTAGCACAAACTGTTGAAGTTGGAGCTCAGACTGCTGCAACTCTGTCA
EST: GAAGGAAACAAATGGACCAAACTGACCAAGCCATTGAGCGCTCAAAGATG GTTGTAGCACAAACTGTTGAAGTTGGAGCTCAGACTGCTGCAACTCTGTCAEST: gi|26457562|gb|CA829145.1|CA829145
genomic: GAAGGAAACAAATGGACCAAACTGACCAAGCCATTGAGCGCTCAAAGATGgtgtgcaact ... tttcttgtagGTTGTAGCACAAACTGTTGAAGTTGGAGCTCAGACTGCTGCAACTCTGTCA
EST: GAAGGAAACAAATGGACCAAACTGACCAAGCCATTGAGCGCTCAAAGATG GTTGTAGCACAAACTGTTGAAGTTGGAGCTCAGACTGCTGCAACTCTGTCAEST: gi|26457605|gb|CA829188.1|CA829188
genomic: GAAGGAAACAAATGGACCAAACTGACCAAGCCATTGAGCGCTCAAAGATGgtgtgcaact ... tttcttgtagGTTGTAGCACAAACTGTTGAAGTTGGAGCTCAGACTGCTGCAACTCTGTCA
EST: GAAGGAAACAAATGGACCAAACTGACCAAGCCATTGAGCGCTCAAAGATG GTTGTAGCACAAACTGTTGAAGTTGGAGCTCAGACTGCTGCAACTCTGTCAEST: gi|22542296|gb|BU092734.1|BU092734
genomic: GAAGGAAACAAATGGACCAAACTGACCAAGCCATTGAGCGCTCAAAGATGgtgtgcaact ... tttcttgtagGTTGTAGCACAAACTGTTGAAGTTGGAGCTCAGACTGCTGCAACTCTGTCA
EST: GAAGGAAACAAATGGACCAAACTGACCAAGCCATTGAGCGCTCAAAGATG GTTGTAGCACAAACTGTTGAAGTTGGAGCTCAGACTGCTGCAACTCTGTCAEST: gi|211004055|gb|FL319206.1|FL319206
genomic: GAAGGAAACAAATGGACCAAACTGACCAAGCCATTGAGCGCTCAAAGATGgtgtgcaact ... tttcttgtagGTTGTAGCACAAACTGTTGAAGTTGGAGCTCAGACTGCTGCAACTCTGTCA
EST: GAAGGAAACAAATGGACCAAACTGACCAAGCCATTGAGCGCTCAAAGATG GTTGTARCACAAACTGTTGAAGTTGGAGCTCA
genomic: GAAGGAAACAAATGGACCAAACTGACCAAGCCATTGAGCGCTCAAAGATGgtgtgcaact ... tttcttgtagGTTGTAGCACAAACTGTTGAAGTTGGAGCTCA
aatagacttcttcagctctcccatgacggattttaaaggagccattttcttgtagGTTGTAGCACAAACTGTTGAAGTTGGAGCTCAGACTGCTGCAACTCTGTCACAACAA
ccattttctt CT-rich tract
attttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgcaactaacatacacccttttcttttctttttttaaccaacaagcagaatccagcaatttcttagagaacacggaagacttcacaaatccataaaagggaagaaaagaataatagacttcttcagctctcccatgacggattttaaaggagccattttcttgtagGTTGTAGCACAAACTGTTGAAGTTGGAGCTCAGACTGCTGCAACTCTGTCACAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC