1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atatgaaattcttcaactgaattgtccttccacattctatagctcctccatgagtatttttacactcacagtgatcaaatatgttgtttaccattgacagAGAGACTGCTGGCAGCAAACAATCCAGGATCTCAAAAGAATAGGCCACACACAATGTTTGCAAGTGGTCCGCCGACCCAAGGTCATCCAAATGGTGGTCC
species | Zea mays |
transcript | GRMZM2G102639_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTATGCTTACAAGAAAGACACGAAAGGAGAACGCCATGGCACACCAGCAG AGAGACTGCTGGCAGCAAACAATCCAGGATCTCAAAAGAATAGGCCACACAEST: gi|71319024|gb|DR796257.1|DR796257
genomic: TTATGCTTACAAGAAAGACACGAAAGGAGAACGCCATGGCACACCAGCAGgtaatgtgtt ... ccattgacagAGAGACTGCTGGCAGCAAACAATCCAGGATCTCAAAAGAATAGGCCACACA
EST: TTATGCTTACAAGAAAGACACGAAAGGAGAACGCCATGGCACACCAGCAG AGAGACTGCTGGCAGCAAACAATCCAGGATCTCAAAAGAATAGGCCACACAEST: gi|211005558|gb|FL032308.1|FL032308
genomic: TTATGCTTACAAGAAAGACACGAAAGGAGAACGCCATGGCACACCAGCAGgtaatgtgtt ... ccattgacagAGAGACTGCTGGCAGCAAACAATCCAGGATCTCAAAAGAATAGGCCACACA
EST: TTATGCTTACAAGAAAGACACGAAAGGAGAACGCCATGGCACACCAGCAG AGAGACTGCTGGCAGCAAACAATCCAGGATCTCAAAAGAATAGGCCACACAEST: gi|31355533|gb|CD439890.1|CD439890
genomic: TTATGCTTACAAGAAAGACACGAAAGGAGAACGCCATGGCACACCAGCAGgtaatgtgtt ... ccattgacagAGAGACTGCTGGCAGCAAACAATCCAGGATCTCAAAAGAATAGGCCACACA
EST: TTATGCTTACAAGAAAGACACGAAAGGAGAACGCCATGGCACACCAGCAG AGAGACTGCTGGCAGCAAACAATCCAGGATCTCAAAAGAATAGGCCACACAEST: gi|71425496|gb|DR806708.1|DR806708
genomic: TTATGCTTACAAGAAAGACACGAAAGGAGAACGCCATGGCACACCAGCAGgtaatgtgtt ... ccattgacagAGAGACTGCTGGCAGCAAACAATCCAGGATCTCAAAAGAATAGGCCACACA
EST: TTATGCTTACAAGAAAGACACGAAAGGAGAACGCCATGGCACACCAGCAG AGAGACTGCTGGCAGCAAACAATCCAGGATCTCAAAAGAATAGGCCACACAEST: gi|148930039|gb|EE285937.2|EE285937
genomic: TTATGCTTACAAGAAAGACACGAAAGGAGAACGCCATGGCACACCAGCAGgtaatgtgtt ... ccattgacagAGAGACTGCTGGCAGCAAACAATCCAGGATCTCAAAAGAATAGGCCACACA
EST: TTATGCTTACAAGAAAGACACGAAAGGAGAACGCCATGGCACACCAGCAG AGAGACTGCTGGCAGCAAACAATCCAGGATCTCAAAAGAATAGGCCACACA
genomic: TTATGCTTACAAGAAAGACACGAAAGGAGAACGCCATGGCACACCAGCAGgtaatgtgtt ... ccattgacagAGAGACTGCTGGCAGCAAACAATCCAGGATCTCAAAAGAATAGGCCACACA
ctccatgagtatttttacactcacagtgatcaaatatgttgtttaccattgacagAGAGACTGCTGGCAGCAAACAATCCAGGATCTCAAAAGAATAGGCCACACACAATGTTTGCAAGTGGTCCGCCGACCCAAGGTCATCCAAATGGTGGTCC
cactcac putative branch site (score: 27)
aaatatgttgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatgaaattcttcaactgaattgtccttccacattctatagctcctccatgagtatttttacactcacagtgatcaaatatgttgtttaccattgacagAGAGACTGCTGGCAGCAAACAATCCAGGATCTCAAAAGAATAGGCCACACACAATGTTTGCAAGTGGTCCGCCGACCCAAGGTCATCCAAATGGTGGTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - -tgaattg
- - - - - - - - - - - - - - - cacattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cactcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgtt