1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatggaacttgttcttctcattatttttacattgtattctggtcccgtaattccattaacttttggttgcttttcagccaaagattgttacctactttctccagtacatagcatctttaattttcattttctgtgtttaaatgtgcatctctgggaacagGCAGCTGCAAATGTTGGTGGCAACTCTGCTGTAGCTGTTGCAAGGCAACCAATTCAGCCTTTTGGTGCTACTCCGGTGGCTGCACATGCAGCTACTAGTA
species | Zea mays |
transcript | GRMZM2G101596_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGTCAACTACTACTCACGTTCAAGAGGATCCTTTATCTGCATTTTTCAGT GCAGCTGCAAATGTTGGTGGCAACTCTGCTGTEST: gi|76928738|gb|DV171746.1|DV171746
genomic: TGTCAACTACTACTCACGTTCAAGAGGATCCTTTATCTGCATTTTTCAGTgtatggaact ... ctgggaacagGCAGCTGCAAATGTTGGTGGCAACTCTGCTGT
EST: TGTCAACTACTACTCACGTTCAAGAGGATCCTTTATCTGCATTTTTCAGT GCAGCTGCAAATGTTGGTGGCAACTCTGCTGTAGCTGTTGCAAGGCAACCAEST: gi|93281394|gb|EB673658.1|EB673658
genomic: TGTCAACTACTACTCACGTTCAAGAGGATCCTTTATCTGCATTTTTCAGTgtatggaact ... ctgggaacagGCAGCTGCAAATGTTGGTGGCAACTCTGCTGTAGCTGTTGCAAGGCAACCA
EST: TGTCAACTACTACTCACGTTCAAGAGGATCCTTTATCTGCATTTTTCAGT GCAGCTGCAAATGTTGGTGGCAACTCTGCTGTAGCTGTTGCAAGGGAACCAEST: gi|76010496|gb|DT937666.1|DT937666
genomic: TGTCAACTACTACTCACGTTCAAGAGGATCCTTTATCTGCATTTTTCAGTgtatggaact ... ctgggaacagGCAGCTGCAAATGTTGGTGGCAACTCTGCTGTAGCTGTTGCAAGGCAACCA
EST: TGTCAACTACTACTCACGTTCAAGAGGATCCTTTATCTGCATTTTTCAGT GCAGCTGCAAATGTTGGTGGCAACTCTGCTGTAGCTGTTGCAAGGCAACCAEST: gi|76909432|gb|DV163378.1|DV163378
genomic: TGTCAACTACTACTCACGTTCAAGAGGATCCTTTATCTGCATTTTTCAGTgtatggaact ... ctgggaacagGCAGCTGCAAATGTTGGTGGCAACTCTGCTGTAGCTGTTGCAAGGCAACCA
EST: TGTCAACTACTACTCACGTTCAAGAGGATCCTTTATCTGCATTTTTCAGT GCAGCTGCAAATGTTGGTGGCAACTCTGCTEST: gi|91048464|gb|EB158882.1|EB158882
genomic: TGTCAACTACTACTCACGTTCAAGAGGATCCTTTATCTGCATTTTTCAGTgtatggaact ... ctgggaacagGCAGCTGCAAATGTTGGTGGCAACTCTGCT
EST: TGTCAACTACTACTCACGTTCAAGAGGATCCTTTATCTGCATTTTTCAGT GCAGCTGCAAATGTTGGTGGCAACTCTGCTGTAGCTGTTGCAAGGGCAAC-EST: gi|89758076|gb|DY687416.1|DY687416
genomic: TGTCAACTACTACTCACGTTCAAGAGGATCCTTTATCTGCATTTTTCAGTgtatggaact ... ctgggaacagGCAGCTGCAAATGTTGGTGGCAACTCTGCTGTAGCTGTTGCAAGG-CAACC
EST: TGTCAACTACTACTCACGTTCAAGAGGATCCTTTATCTGCATTTTTCAGT GCAGCTGCAAATGTTGGTGGCAACTCTGCTGTAGCTGTTGCAAGGCAACCAEST: gi|148999366|gb|EE036307.2|EE036307
genomic: TGTCAACTACTACTCACGTTCAAGAGGATCCTTTATCTGCATTTTTCAGTgtatggaact ... ctgggaacagGCAGCTGCAAATGTTGGTGGCAACTCTGCTGTAGCTGTTGCAAGGCAACCA
EST: TGTCAACTACTACTCACGTTCAAGAGGATCCTTTATCTGCATTTTTCAGT GCAGCTGCAAATGTTGGTGGCAACTCTGCTGTAGCTGTTGCAAGGGCA-CCEST: gi|78114665|gb|DV533053.1|DV533053
genomic: TGTCAACTACTACTCACGTTCAAGAGGATCCTTTATCTGCATTTTTCAGTgtatggaact ... ctgggaacagGCAGCTGCAAATGTTGGTGGCAACTCTGCTGTAGCTGTTGCAAGG-CAACC
EST: TGTCAACTACTACTCACGTTCAAGAGGATCCTTTATCTGCATTTTTCAGT GCAGCTGCAAATGTTGGTGGCAACTCTGCTGTAGCTGTTGCAAGG
genomic: TGTCAACTACTACTCACGTTCAAGAGGATCCTTTATCTGCATTTTTCAGTgtatggaact ... ctgggaacagGCAGCTGCAAATGTTGGTGGCAACTCTGCTGTAGCTGTTGCAAGG
acatagcatctttaattttcattttctgtgtttaaatgtgcatctctgggaacagGCAGCTGCAAATGTTGGTGGCAACTCTGCTGTAGCTGTTGCAAGGCAACCAATTCAGCCTTTTGGTGCTACTCCGGTGGCTGCACATGCAGCTACTAGTA
ctttaat putative branch site (score: 44)
catctct putative PPT
tttaattttcattttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggaacttgttcttctcattatttttacattgtattctggtcccgtaattccattaacttttggttgcttttcagccaaagattgttacctactttctccagtacatagcatctttaattttcattttctgtgtttaaatgtgcatctctgggaacagGCAGCTGCAAATGTTGGTGGCAACTCTGCTGTAGCTGTTGCAAGGCAACCAATTCAGCCTTTTGGTGCTACTCCGGTGGCTGCACATGCAGCTACTAGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT